Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
COL4A3BPQ9Y5P4 KRT89P-201ENST00000620027 1478 ntBASIC20.23■□□□□ 0.83
COL4A3BPQ9Y5P4 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.23■□□□□ 0.83
COL4A3BPQ9Y5P4 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
COL4A3BPQ9Y5P4 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.23■□□□□ 0.83
COL4A3BPQ9Y5P4 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A3BPQ9Y5P4 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.23■□□□□ 0.83
COL4A3BPQ9Y5P4 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A3BPQ9Y5P4 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 MIR3180-1-201ENST00000580374 94 ntBASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 MIR3180-3-201ENST00000584616 94 ntBASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 AP002414.4-201ENST00000589764 1148 ntBASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A3BPQ9Y5P4 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 AC092329.2-201ENST00000598402 547 ntBASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms