Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
DDX41Q9UJV9 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.8■□□□□ 0.92
DDX41Q9UJV9 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.8■□□□□ 0.92
DDX41Q9UJV9 WDR88-203ENST00000592765 651 ntTSL 5 BASIC20.8■□□□□ 0.92
DDX41Q9UJV9 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.8■□□□□ 0.92
DDX41Q9UJV9 AC024563.2-201ENST00000603282 481 ntBASIC20.8■□□□□ 0.92
DDX41Q9UJV9 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
DDX41Q9UJV9 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
DDX41Q9UJV9 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
DDX41Q9UJV9 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
DDX41Q9UJV9 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
DDX41Q9UJV9 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
DDX41Q9UJV9 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 TEN1-204ENST00000588202 862 ntTSL 3 BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 AC009053.2-201ENST00000563701 2365 ntBASIC20.79■□□□□ 0.92
DDX41Q9UJV9 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
DDX41Q9UJV9 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 IGHGP-201ENST00000390555 1178 ntBASIC20.78■□□□□ 0.92
DDX41Q9UJV9 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 AC090616.6-201ENST00000582640 721 ntBASIC20.78■□□□□ 0.92
DDX41Q9UJV9 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 GPR32P1-201ENST00000601788 811 ntBASIC20.78■□□□□ 0.92
DDX41Q9UJV9 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
DDX41Q9UJV9 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 AC009065.1-201ENST00000564055 1225 ntBASIC20.77■□□□□ 0.92
DDX41Q9UJV9 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 WIZP1-201ENST00000531444 2299 ntBASIC20.77■□□□□ 0.92
DDX41Q9UJV9 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX41Q9UJV9 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
DDX41Q9UJV9 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.77■□□□□ 0.91
DDX41Q9UJV9 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
DDX41Q9UJV9 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
DDX41Q9UJV9 AIRN-201ENST00000601203 4374 ntBASIC20.76■□□□□ 0.91
DDX41Q9UJV9 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
DDX41Q9UJV9 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
DDX41Q9UJV9 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.76■□□□□ 0.91
DDX41Q9UJV9 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms