Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 MIR4674-201ENST00000582457 87 ntBASIC17.96■□□□□ 0.47
SSU72Q9NP77 LINC01451-201ENST00000623792 534 ntBASIC17.96■□□□□ 0.47
SSU72Q9NP77 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSU72Q9NP77 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SSU72Q9NP77 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SSU72Q9NP77 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.96■□□□□ 0.47
SSU72Q9NP77 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSU72Q9NP77 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSU72Q9NP77 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SSU72Q9NP77 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SSU72Q9NP77 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.96■□□□□ 0.47
SSU72Q9NP77 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSU72Q9NP77 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSU72Q9NP77 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSU72Q9NP77 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSU72Q9NP77 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSU72Q9NP77 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.96■□□□□ 0.46
SSU72Q9NP77 AC022898.2-201ENST00000616822 1312 ntBASIC17.96■□□□□ 0.46
SSU72Q9NP77 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
SSU72Q9NP77 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SSU72Q9NP77 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.95■□□□□ 0.46
SSU72Q9NP77 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.95■□□□□ 0.46
SSU72Q9NP77 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSU72Q9NP77 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSU72Q9NP77 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.95■□□□□ 0.46
SSU72Q9NP77 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SSU72Q9NP77 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.95■□□□□ 0.46
SSU72Q9NP77 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SSU72Q9NP77 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSU72Q9NP77 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSU72Q9NP77 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
SSU72Q9NP77 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSU72Q9NP77 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SSU72Q9NP77 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSU72Q9NP77 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.95■□□□□ 0.46
SSU72Q9NP77 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSU72Q9NP77 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSU72Q9NP77 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
SSU72Q9NP77 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SSU72Q9NP77 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSU72Q9NP77 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.95■□□□□ 0.46
SSU72Q9NP77 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.95■□□□□ 0.46
SSU72Q9NP77 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSU72Q9NP77 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSU72Q9NP77 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.95■□□□□ 0.46
SSU72Q9NP77 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SSU72Q9NP77 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.95■□□□□ 0.46
SSU72Q9NP77 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SSU72Q9NP77 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.95■□□□□ 0.46
SSU72Q9NP77 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SSU72Q9NP77 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SSU72Q9NP77 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.94■□□□□ 0.46
SSU72Q9NP77 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.94■□□□□ 0.46
SSU72Q9NP77 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 MFAP1P1-201ENST00000442257 1255 ntBASIC17.94■□□□□ 0.46
SSU72Q9NP77 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 RNA5SP413-201ENST00000516373 109 ntBASIC17.94■□□□□ 0.46
SSU72Q9NP77 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 RARRES2P10-201ENST00000564312 460 ntBASIC17.94■□□□□ 0.46
SSU72Q9NP77 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.94■□□□□ 0.46
SSU72Q9NP77 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.94■□□□□ 0.46
SSU72Q9NP77 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
SSU72Q9NP77 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.94■□□□□ 0.46
SSU72Q9NP77 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.94■□□□□ 0.46
SSU72Q9NP77 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SSU72Q9NP77 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SSU72Q9NP77 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.93■□□□□ 0.46
SSU72Q9NP77 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SSU72Q9NP77 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
SSU72Q9NP77 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
SSU72Q9NP77 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SSU72Q9NP77 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SSU72Q9NP77 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SSU72Q9NP77 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SSU72Q9NP77 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
SSU72Q9NP77 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SSU72Q9NP77 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.93■□□□□ 0.46
SSU72Q9NP77 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
SSU72Q9NP77 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.93■□□□□ 0.46
SSU72Q9NP77 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.93■□□□□ 0.46
SSU72Q9NP77 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SSU72Q9NP77 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.93■□□□□ 0.46
SSU72Q9NP77 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SSU72Q9NP77 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.93■□□□□ 0.46
SSU72Q9NP77 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SSU72Q9NP77 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms