Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC12.64□□□□□ -0.39
VPS25Q9BRG1 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
VPS25Q9BRG1 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 AC005703.6-201ENST00000623265 1329 ntBASIC12.63□□□□□ -0.39
VPS25Q9BRG1 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 FP475955.4-201ENST00000623131 1990 ntBASIC12.63□□□□□ -0.39
VPS25Q9BRG1 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC12.63□□□□□ -0.39
VPS25Q9BRG1 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
VPS25Q9BRG1 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 ARHGAP35-206ENST00000614079 7696 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 HARS-201ENST00000307633 1780 ntTSL 2 BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 AL691432.2-201ENST00000607222 2038 ntBASIC12.61□□□□□ -0.39
VPS25Q9BRG1 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 AC139749.1-202ENST00000617529 3139 ntBASIC12.61□□□□□ -0.39
VPS25Q9BRG1 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 NKILA-201ENST00000613231 537 ntTSL 4 BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 RAB11FIP1-202ENST00000330843 7811 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
VPS25Q9BRG1 ANKRD18DP-204ENST00000455355 1975 ntBASIC12.61□□□□□ -0.39
VPS25Q9BRG1 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC12.61□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms