Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
NPAS1Q99742 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS1Q99742 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS1Q99742 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.48■□□□□ 0.23
NPAS1Q99742 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.48■□□□□ 0.23
NPAS1Q99742 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
NPAS1Q99742 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.48■□□□□ 0.23
NPAS1Q99742 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS1Q99742 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
NPAS1Q99742 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.48■□□□□ 0.23
NPAS1Q99742 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.48■□□□□ 0.23
NPAS1Q99742 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.48■□□□□ 0.23
NPAS1Q99742 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.48■□□□□ 0.23
NPAS1Q99742 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.48■□□□□ 0.23
NPAS1Q99742 AC132938.6-201ENST00000623828 1655 ntBASIC16.48■□□□□ 0.23
NPAS1Q99742 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.48■□□□□ 0.23
NPAS1Q99742 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.48■□□□□ 0.23
NPAS1Q99742 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.48■□□□□ 0.23
NPAS1Q99742 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
NPAS1Q99742 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS1Q99742 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.48■□□□□ 0.23
NPAS1Q99742 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.48■□□□□ 0.23
NPAS1Q99742 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS1Q99742 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS1Q99742 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS1Q99742 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS1Q99742 AL139384.1-201ENST00000612143 3047 ntBASIC16.48■□□□□ 0.23
NPAS1Q99742 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS1Q99742 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS1Q99742 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.48■□□□□ 0.23
NPAS1Q99742 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.47■□□□□ 0.23
NPAS1Q99742 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.47■□□□□ 0.23
NPAS1Q99742 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
NPAS1Q99742 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.47■□□□□ 0.23
NPAS1Q99742 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
NPAS1Q99742 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 PCED1CP-201ENST00000419887 785 ntBASIC16.47■□□□□ 0.23
NPAS1Q99742 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.47■□□□□ 0.23
NPAS1Q99742 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.47■□□□□ 0.23
NPAS1Q99742 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.47■□□□□ 0.23
NPAS1Q99742 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.47■□□□□ 0.23
NPAS1Q99742 AC004263.2-201ENST00000617183 678 ntBASIC16.47■□□□□ 0.23
NPAS1Q99742 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
NPAS1Q99742 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
NPAS1Q99742 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
NPAS1Q99742 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS1Q99742 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS1Q99742 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
NPAS1Q99742 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
NPAS1Q99742 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS1Q99742 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.46■□□□□ 0.23
NPAS1Q99742 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS1Q99742 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.46■□□□□ 0.23
NPAS1Q99742 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.46■□□□□ 0.23
NPAS1Q99742 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS1Q99742 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS1Q99742 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS1Q99742 LINC00602-201ENST00000629776 2065 ntBASIC16.46■□□□□ 0.23
NPAS1Q99742 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS1Q99742 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
NPAS1Q99742 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
NPAS1Q99742 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS1Q99742 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS1Q99742 KRT18P48-201ENST00000434763 852 ntBASIC16.46■□□□□ 0.23
NPAS1Q99742 AP003733.1-201ENST00000491725 852 ntBASIC16.46■□□□□ 0.23
NPAS1Q99742 AC116407.4-201ENST00000623319 1061 ntBASIC16.46■□□□□ 0.23
NPAS1Q99742 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
NPAS1Q99742 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
NPAS1Q99742 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.46■□□□□ 0.23
NPAS1Q99742 AC018470.1-201ENST00000624790 3129 ntBASIC16.46■□□□□ 0.23
NPAS1Q99742 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
NPAS1Q99742 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.46■□□□□ 0.23
NPAS1Q99742 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.46■□□□□ 0.23
NPAS1Q99742 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS1Q99742 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS1Q99742 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
NPAS1Q99742 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
NPAS1Q99742 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
NPAS1Q99742 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.46■□□□□ 0.22
NPAS1Q99742 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
NPAS1Q99742 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.45■□□□□ 0.22
NPAS1Q99742 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NPAS1Q99742 LINC00167-201ENST00000530583 1419 ntBASIC16.45■□□□□ 0.22
NPAS1Q99742 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NPAS1Q99742 AC011270.2-201ENST00000624293 2550 ntBASIC16.45■□□□□ 0.22
NPAS1Q99742 Z83836.1-201ENST00000624605 1642 ntBASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms