Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL357033.4-201ENST00000617703 1807 ntBASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 AC022211.2-201ENST00000585075 2527 ntBASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 NKILA-202ENST00000614771 2598 ntBASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF540Q8NDQ6 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 NBPF21P-201ENST00000425093 1451 ntBASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 KRT8P32-201ENST00000512863 1461 ntBASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 AC011676.5-201ENST00000624864 2660 ntBASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
ZNF540Q8NDQ6 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms