Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA1P55317 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA1P55317 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
FOXA1P55317 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA1P55317 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
FOXA1P55317 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA1P55317 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA1P55317 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA1P55317 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.52■□□□□ 0.4
FOXA1P55317 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.52■□□□□ 0.4
FOXA1P55317 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA1P55317 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.52■□□□□ 0.4
FOXA1P55317 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA1P55317 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA1P55317 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
FOXA1P55317 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
FOXA1P55317 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA1P55317 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA1P55317 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA1P55317 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA1P55317 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA1P55317 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA1P55317 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.52■□□□□ 0.4
FOXA1P55317 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.52■□□□□ 0.4
FOXA1P55317 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
FOXA1P55317 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
FOXA1P55317 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
FOXA1P55317 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
FOXA1P55317 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
FOXA1P55317 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
FOXA1P55317 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
FOXA1P55317 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
FOXA1P55317 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
FOXA1P55317 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
FOXA1P55317 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
FOXA1P55317 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.39
FOXA1P55317 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.52■□□□□ 0.39
FOXA1P55317 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
FOXA1P55317 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.52■□□□□ 0.39
FOXA1P55317 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.52■□□□□ 0.39
FOXA1P55317 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXA1P55317 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.51■□□□□ 0.39
FOXA1P55317 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
FOXA1P55317 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.51■□□□□ 0.39
FOXA1P55317 KRT17P2-201ENST00000300992 1314 ntBASIC17.51■□□□□ 0.39
FOXA1P55317 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
FOXA1P55317 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.51■□□□□ 0.39
FOXA1P55317 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXA1P55317 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.51■□□□□ 0.39
FOXA1P55317 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
FOXA1P55317 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXA1P55317 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXA1P55317 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
FOXA1P55317 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
FOXA1P55317 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
FOXA1P55317 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
FOXA1P55317 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXA1P55317 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
FOXA1P55317 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.51■□□□□ 0.39
FOXA1P55317 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.51■□□□□ 0.39
FOXA1P55317 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.51■□□□□ 0.39
FOXA1P55317 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
FOXA1P55317 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
FOXA1P55317 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
FOXA1P55317 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
FOXA1P55317 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
FOXA1P55317 FAM87A-204ENST00000613235 858 ntBASIC17.51■□□□□ 0.39
FOXA1P55317 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.51■□□□□ 0.39
FOXA1P55317 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
FOXA1P55317 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
FOXA1P55317 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXA1P55317 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
FOXA1P55317 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXA1P55317 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.51■□□□□ 0.39
FOXA1P55317 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
FOXA1P55317 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
FOXA1P55317 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
FOXA1P55317 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.5■□□□□ 0.39
FOXA1P55317 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 ECEL1P2-202ENST00000465689 757 ntBASIC17.5■□□□□ 0.39
FOXA1P55317 DUTP2-201ENST00000519164 463 ntBASIC17.5■□□□□ 0.39
FOXA1P55317 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.5■□□□□ 0.39
FOXA1P55317 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 MIR4497-201ENST00000583208 89 ntBASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms