Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC22.67■■□□□ 1.22
COL5A3P25940 PUS1-205ENST00000535067 838 ntTSL 3 BASIC22.67■■□□□ 1.22
COL5A3P25940 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
COL5A3P25940 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC22.67■■□□□ 1.22
COL5A3P25940 AL078644.1-201ENST00000609881 752 ntBASIC22.67■■□□□ 1.22
COL5A3P25940 AC004706.3-202ENST00000621574 984 ntBASIC22.67■■□□□ 1.22
COL5A3P25940 AC010507.1-201ENST00000633895 436 ntBASIC22.67■■□□□ 1.22
COL5A3P25940 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
COL5A3P25940 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC22.67■■□□□ 1.22
COL5A3P25940 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC22.67■■□□□ 1.22
COL5A3P25940 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC22.67■■□□□ 1.22
COL5A3P25940 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC22.66■■□□□ 1.22
COL5A3P25940 PNMT-202ENST00000394246 821 ntTSL 2 BASIC22.66■■□□□ 1.22
COL5A3P25940 IGLL3P-201ENST00000412472 434 ntBASIC22.66■■□□□ 1.22
COL5A3P25940 ATP6V0CP3-201ENST00000417255 467 ntBASIC22.66■■□□□ 1.22
COL5A3P25940 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC22.66■■□□□ 1.22
COL5A3P25940 MKNK2P1-201ENST00000437526 628 ntBASIC22.66■■□□□ 1.22
COL5A3P25940 MIR4751-201ENST00000578027 74 ntBASIC22.66■■□□□ 1.22
COL5A3P25940 AC008667.4-201ENST00000607370 168 ntBASIC22.66■■□□□ 1.22
COL5A3P25940 AL596442.2-201ENST00000610240 980 ntBASIC22.66■■□□□ 1.22
COL5A3P25940 AL805961.1-202ENST00000641562 540 ntBASIC22.66■■□□□ 1.22
COL5A3P25940 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC22.66■■□□□ 1.22
COL5A3P25940 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL5A3P25940 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL5A3P25940 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL5A3P25940 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
COL5A3P25940 TBC1D3P5-201ENST00000579401 1545 ntBASIC22.65■■□□□ 1.22
COL5A3P25940 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
COL5A3P25940 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL5A3P25940 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
COL5A3P25940 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
COL5A3P25940 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL5A3P25940 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
COL5A3P25940 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC22.65■■□□□ 1.22
COL5A3P25940 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
COL5A3P25940 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC22.65■■□□□ 1.22
COL5A3P25940 ADM-207ENST00000530439 1839 ntTSL 2 BASIC22.65■■□□□ 1.22
COL5A3P25940 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL5A3P25940 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
COL5A3P25940 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL5A3P25940 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL5A3P25940 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL5A3P25940 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
COL5A3P25940 RPS15-207ENST00000591032 550 ntTSL 3 BASIC22.65■■□□□ 1.22
COL5A3P25940 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
COL5A3P25940 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL5A3P25940 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL5A3P25940 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL5A3P25940 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL5A3P25940 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL5A3P25940 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL5A3P25940 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL5A3P25940 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL5A3P25940 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC22.64■■□□□ 1.21
COL5A3P25940 AC005829.1-201ENST00000570002 483 ntBASIC22.64■■□□□ 1.21
COL5A3P25940 AC079781.4-201ENST00000641908 219 ntBASIC22.64■■□□□ 1.21
COL5A3P25940 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL5A3P25940 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
COL5A3P25940 AC132938.5-201ENST00000624980 1813 ntBASIC22.64■■□□□ 1.21
COL5A3P25940 ELL2P1-201ENST00000413990 1906 ntBASIC22.64■■□□□ 1.21
COL5A3P25940 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
COL5A3P25940 MED29-202ENST00000594368 1471 ntTSL 2 BASIC22.64■■□□□ 1.21
COL5A3P25940 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC22.64■■□□□ 1.21
COL5A3P25940 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL5A3P25940 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC22.63■■□□□ 1.21
COL5A3P25940 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL5A3P25940 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL5A3P25940 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
COL5A3P25940 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC22.63■■□□□ 1.21
COL5A3P25940 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC22.63■■□□□ 1.21
COL5A3P25940 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC22.63■■□□□ 1.21
COL5A3P25940 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
COL5A3P25940 AC019129.2-201ENST00000609837 1235 ntBASIC22.63■■□□□ 1.21
COL5A3P25940 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC22.63■■□□□ 1.21
COL5A3P25940 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL5A3P25940 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC22.63■■□□□ 1.21
COL5A3P25940 FUT8-AS1-201ENST00000621019 1521 ntBASIC22.63■■□□□ 1.21
COL5A3P25940 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
COL5A3P25940 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL5A3P25940 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
COL5A3P25940 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC22.62■■□□□ 1.21
COL5A3P25940 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
COL5A3P25940 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC22.62■■□□□ 1.21
COL5A3P25940 PDPK2P-202ENST00000562415 1191 ntBASIC22.62■■□□□ 1.21
COL5A3P25940 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC22.62■■□□□ 1.21
COL5A3P25940 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL5A3P25940 GPR89P-201ENST00000407924 1495 ntBASIC22.62■■□□□ 1.21
COL5A3P25940 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL5A3P25940 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL5A3P25940 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL5A3P25940 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC22.62■■□□□ 1.21
COL5A3P25940 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL5A3P25940 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
COL5A3P25940 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL5A3P25940 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL5A3P25940 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC22.62■■□□□ 1.21
COL5A3P25940 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
COL5A3P25940 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL5A3P25940 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
COL5A3P25940 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms