Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC23.82■■□□□ 1.4
COL3A1P02461 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL3A1P02461 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL3A1P02461 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC23.81■■□□□ 1.4
COL3A1P02461 CTNS-203ENST00000399306 803 ntTSL 3 BASIC23.81■■□□□ 1.4
COL3A1P02461 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL3A1P02461 RBSN-204ENST00000449050 903 ntTSL 2 BASIC23.81■■□□□ 1.4
COL3A1P02461 FGFR3P6-201ENST00000457012 610 ntBASIC23.81■■□□□ 1.4
COL3A1P02461 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC23.81■■□□□ 1.4
COL3A1P02461 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC23.81■■□□□ 1.4
COL3A1P02461 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC23.81■■□□□ 1.4
COL3A1P02461 PAM16-208ENST00000573553 722 ntTSL 2 BASIC23.81■■□□□ 1.4
COL3A1P02461 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL3A1P02461 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
COL3A1P02461 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC23.81■■□□□ 1.4
COL3A1P02461 VPS51-217ENST00000639871 243 ntTSL 5 BASIC23.81■■□□□ 1.4
COL3A1P02461 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC23.81■■□□□ 1.4
COL3A1P02461 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL3A1P02461 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL3A1P02461 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
COL3A1P02461 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL3A1P02461 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC23.81■■□□□ 1.4
COL3A1P02461 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL3A1P02461 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL3A1P02461 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC23.81■■□□□ 1.4
COL3A1P02461 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
COL3A1P02461 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC23.81■■□□□ 1.4
COL3A1P02461 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL3A1P02461 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL3A1P02461 TPM4P1-201ENST00000436100 807 ntBASIC23.81■■□□□ 1.4
COL3A1P02461 THAP5-204ENST00000438865 868 ntTSL 2 BASIC23.81■■□□□ 1.4
COL3A1P02461 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC23.81■■□□□ 1.4
COL3A1P02461 AC106795.1-205ENST00000512851 1056 ntBASIC23.81■■□□□ 1.4
COL3A1P02461 RNA5SP419-201ENST00000515908 135 ntBASIC23.81■■□□□ 1.4
COL3A1P02461 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC23.81■■□□□ 1.4
COL3A1P02461 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC23.81■■□□□ 1.4
COL3A1P02461 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
COL3A1P02461 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC23.81■■□□□ 1.4
COL3A1P02461 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL3A1P02461 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL3A1P02461 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC23.81■■□□□ 1.4
COL3A1P02461 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC23.8■■□□□ 1.4
COL3A1P02461 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL3A1P02461 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
COL3A1P02461 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC23.8■■□□□ 1.4
COL3A1P02461 AC135050.7-201ENST00000624508 2218 ntBASIC23.8■■□□□ 1.4
COL3A1P02461 ABALON-201ENST00000629058 1903 ntBASIC23.8■■□□□ 1.4
COL3A1P02461 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC23.8■■□□□ 1.4
COL3A1P02461 KRT8P10-201ENST00000450021 1447 ntBASIC23.8■■□□□ 1.4
COL3A1P02461 MED16-201ENST00000269814 1199 ntTSL 5 BASIC23.8■■□□□ 1.4
COL3A1P02461 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL3A1P02461 FDX1P1-201ENST00000449115 551 ntBASIC23.8■■□□□ 1.4
COL3A1P02461 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL3A1P02461 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC23.8■■□□□ 1.4
COL3A1P02461 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC23.8■■□□□ 1.4
COL3A1P02461 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL3A1P02461 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC23.8■■□□□ 1.4
COL3A1P02461 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC23.79■■□□□ 1.4
COL3A1P02461 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
COL3A1P02461 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC23.79■■□□□ 1.4
COL3A1P02461 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC23.79■■□□□ 1.4
COL3A1P02461 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC23.79■■□□□ 1.4
COL3A1P02461 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 DFFB-203ENST00000341385 572 ntTSL 5 BASIC23.79■■□□□ 1.4
COL3A1P02461 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC23.79■■□□□ 1.4
COL3A1P02461 AL121912.1-201ENST00000603683 238 ntBASIC23.79■■□□□ 1.4
COL3A1P02461 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
COL3A1P02461 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC23.79■■□□□ 1.4
COL3A1P02461 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 AC009949.1-201ENST00000623048 1830 ntBASIC23.79■■□□□ 1.4
COL3A1P02461 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL3A1P02461 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC23.79■■□□□ 1.4
COL3A1P02461 ADM-208ENST00000534464 1640 ntTSL 2 BASIC23.79■■□□□ 1.4
COL3A1P02461 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
COL3A1P02461 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL3A1P02461 STK4-201ENST00000372801 2038 ntTSL 2 BASIC23.78■■□□□ 1.4
COL3A1P02461 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC23.78■■□□□ 1.4
COL3A1P02461 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC23.78■■□□□ 1.4
COL3A1P02461 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC23.78■■□□□ 1.4
COL3A1P02461 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL3A1P02461 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL3A1P02461 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL3A1P02461 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL3A1P02461 TPM1-218ENST00000559281 851 ntTSL 5 BASIC23.78■■□□□ 1.4
COL3A1P02461 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL3A1P02461 AC008608.2-201ENST00000606089 416 ntBASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms