Protein–RNA interactions for Protein: O75131

CPNE3, Copine-3, humanhuman

Known RBP Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3O75131 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE3O75131 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE3O75131 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CPNE3O75131 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE3O75131 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE3O75131 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CPNE3O75131 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.37■□□□□ 0.37
CPNE3O75131 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CPNE3O75131 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE3O75131 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE3O75131 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.37■□□□□ 0.37
CPNE3O75131 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CPNE3O75131 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE3O75131 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE3O75131 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE3O75131 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE3O75131 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE3O75131 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.37■□□□□ 0.37
CPNE3O75131 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.37■□□□□ 0.37
CPNE3O75131 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.37■□□□□ 0.37
CPNE3O75131 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE3O75131 AC104819.1-201ENST00000504587 486 ntBASIC17.37■□□□□ 0.37
CPNE3O75131 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.37■□□□□ 0.37
CPNE3O75131 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE3O75131 Z69720.1-201ENST00000601483 472 ntBASIC17.37■□□□□ 0.37
CPNE3O75131 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE3O75131 AL592071.1-201ENST00000611956 408 ntBASIC17.37■□□□□ 0.37
CPNE3O75131 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE3O75131 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE3O75131 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
CPNE3O75131 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE3O75131 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE3O75131 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE3O75131 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CPNE3O75131 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE3O75131 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.37■□□□□ 0.37
CPNE3O75131 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.37■□□□□ 0.37
CPNE3O75131 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.37■□□□□ 0.37
CPNE3O75131 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE3O75131 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE3O75131 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE3O75131 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE3O75131 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE3O75131 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE3O75131 AC004870.1-201ENST00000315132 882 ntBASIC17.36■□□□□ 0.37
CPNE3O75131 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE3O75131 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.36■□□□□ 0.37
CPNE3O75131 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.36■□□□□ 0.37
CPNE3O75131 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.36■□□□□ 0.37
CPNE3O75131 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.36■□□□□ 0.37
CPNE3O75131 VENTXP7-201ENST00000475503 772 ntBASIC17.36■□□□□ 0.37
CPNE3O75131 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.36■□□□□ 0.37
CPNE3O75131 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.36■□□□□ 0.37
CPNE3O75131 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.36■□□□□ 0.37
CPNE3O75131 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.36■□□□□ 0.37
CPNE3O75131 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.36■□□□□ 0.37
CPNE3O75131 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.36■□□□□ 0.37
CPNE3O75131 AL121772.3-201ENST00000610840 674 ntBASIC17.36■□□□□ 0.37
CPNE3O75131 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CPNE3O75131 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.36■□□□□ 0.37
CPNE3O75131 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE3O75131 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.36■□□□□ 0.37
CPNE3O75131 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE3O75131 AL353692.3-201ENST00000407031 1396 ntBASIC17.36■□□□□ 0.37
CPNE3O75131 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE3O75131 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE3O75131 AC009102.3-201ENST00000623118 1491 ntBASIC17.36■□□□□ 0.37
CPNE3O75131 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE3O75131 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE3O75131 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE3O75131 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
CPNE3O75131 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE3O75131 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE3O75131 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.36■□□□□ 0.37
CPNE3O75131 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE3O75131 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE3O75131 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE3O75131 AP000997.3-201ENST00000623333 2250 ntBASIC17.35■□□□□ 0.37
CPNE3O75131 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CPNE3O75131 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE3O75131 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CPNE3O75131 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.35■□□□□ 0.37
CPNE3O75131 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE3O75131 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE3O75131 RN7SL510P-201ENST00000581311 263 ntBASIC17.35■□□□□ 0.37
CPNE3O75131 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CPNE3O75131 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.35■□□□□ 0.37
CPNE3O75131 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CPNE3O75131 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.35■□□□□ 0.37
CPNE3O75131 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE3O75131 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE3O75131 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE3O75131 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.35■□□□□ 0.37
CPNE3O75131 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE3O75131 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE3O75131 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CPNE3O75131 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE3O75131 HTR7P1-202ENST00000624664 4411 ntBASIC17.35■□□□□ 0.37
CPNE3O75131 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE3O75131 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms