Protein–RNA interactions for Protein: Q9Y5I0

PCDHA13, Protocadherin alpha-13, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA13Q9Y5I0 WHAMMP3-201ENST00000611636 1609 ntBASIC26.41■■□□□ 1.82
PCDHA13Q9Y5I0 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC26.41■■□□□ 1.82
PCDHA13Q9Y5I0 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHA13Q9Y5I0 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
PCDHA13Q9Y5I0 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
PCDHA13Q9Y5I0 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
PCDHA13Q9Y5I0 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
PCDHA13Q9Y5I0 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
PCDHA13Q9Y5I0 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.39■■□□□ 1.82
PCDHA13Q9Y5I0 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
PCDHA13Q9Y5I0 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
PCDHA13Q9Y5I0 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PCDHA13Q9Y5I0 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC26.38■■□□□ 1.81
PCDHA13Q9Y5I0 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
PCDHA13Q9Y5I0 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
PCDHA13Q9Y5I0 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
PCDHA13Q9Y5I0 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
PCDHA13Q9Y5I0 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
PCDHA13Q9Y5I0 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
PCDHA13Q9Y5I0 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
PCDHA13Q9Y5I0 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
PCDHA13Q9Y5I0 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PCDHA13Q9Y5I0 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA13Q9Y5I0 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC26.34■■□□□ 1.81
PCDHA13Q9Y5I0 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA13Q9Y5I0 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA13Q9Y5I0 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC26.34■■□□□ 1.81
PCDHA13Q9Y5I0 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA13Q9Y5I0 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA13Q9Y5I0 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA13Q9Y5I0 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA13Q9Y5I0 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA13Q9Y5I0 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHA13Q9Y5I0 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHA13Q9Y5I0 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHA13Q9Y5I0 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHA13Q9Y5I0 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC26.33■■□□□ 1.8
PCDHA13Q9Y5I0 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
PCDHA13Q9Y5I0 PKM-204ENST00000449901 2526 ntTSL 2 BASIC26.32■■□□□ 1.8
PCDHA13Q9Y5I0 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PCDHA13Q9Y5I0 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PCDHA13Q9Y5I0 AL162393.1-201ENST00000437852 946 ntBASIC26.32■■□□□ 1.8
PCDHA13Q9Y5I0 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
PCDHA13Q9Y5I0 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
PCDHA13Q9Y5I0 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC26.32■■□□□ 1.8
PCDHA13Q9Y5I0 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC26.31■■□□□ 1.8
PCDHA13Q9Y5I0 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.31■■□□□ 1.8
PCDHA13Q9Y5I0 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
PCDHA13Q9Y5I0 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC26.31■■□□□ 1.8
PCDHA13Q9Y5I0 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
PCDHA13Q9Y5I0 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
PCDHA13Q9Y5I0 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC26.3■■□□□ 1.8
PCDHA13Q9Y5I0 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PCDHA13Q9Y5I0 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PCDHA13Q9Y5I0 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PCDHA13Q9Y5I0 AC044849.2-201ENST00000606596 710 ntBASIC26.3■■□□□ 1.8
PCDHA13Q9Y5I0 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC26.3■■□□□ 1.8
PCDHA13Q9Y5I0 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC26.3■■□□□ 1.8
PCDHA13Q9Y5I0 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PCDHA13Q9Y5I0 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC26.29■■□□□ 1.8
PCDHA13Q9Y5I0 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHA13Q9Y5I0 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHA13Q9Y5I0 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHA13Q9Y5I0 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHA13Q9Y5I0 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHA13Q9Y5I0 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
PCDHA13Q9Y5I0 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
PCDHA13Q9Y5I0 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PCDHA13Q9Y5I0 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
PCDHA13Q9Y5I0 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHA13Q9Y5I0 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHA13Q9Y5I0 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHA13Q9Y5I0 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHA13Q9Y5I0 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
PCDHA13Q9Y5I0 AC021231.2-201ENST00000594613 730 ntBASIC26.27■■□□□ 1.8
PCDHA13Q9Y5I0 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
PCDHA13Q9Y5I0 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHA13Q9Y5I0 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHA13Q9Y5I0 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHA13Q9Y5I0 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.26■■□□□ 1.79
PCDHA13Q9Y5I0 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PCDHA13Q9Y5I0 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
PCDHA13Q9Y5I0 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC26.25■■□□□ 1.79
PCDHA13Q9Y5I0 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.25■■□□□ 1.79
PCDHA13Q9Y5I0 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC26.25■■□□□ 1.79
PCDHA13Q9Y5I0 CEBPA-AS1-201ENST00000592982 2198 ntBASIC26.24■■□□□ 1.79
PCDHA13Q9Y5I0 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHA13Q9Y5I0 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
PCDHA13Q9Y5I0 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHA13Q9Y5I0 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHA13Q9Y5I0 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC26.24■■□□□ 1.79
PCDHA13Q9Y5I0 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHA13Q9Y5I0 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHA13Q9Y5I0 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHA13Q9Y5I0 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PCDHA13Q9Y5I0 RPS2-210ENST00000530225 765 ntTSL 2 BASIC26.23■■□□□ 1.79
PCDHA13Q9Y5I0 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.23■■□□□ 1.79
PCDHA13Q9Y5I0 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PCDHA13Q9Y5I0 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PCDHA13Q9Y5I0 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms