Protein–RNA interactions for Protein: Q9Y5G1

PCDHGB3, Protocadherin gamma-B3, humanhuman

Predictions only

Length 929 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGB3Q9Y5G1 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.34■■□□□ 1.33
PCDHGB3Q9Y5G1 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
PCDHGB3Q9Y5G1 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
PCDHGB3Q9Y5G1 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.34■■□□□ 1.33
PCDHGB3Q9Y5G1 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.34■■□□□ 1.33
PCDHGB3Q9Y5G1 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHGB3Q9Y5G1 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHGB3Q9Y5G1 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.33■■□□□ 1.33
PCDHGB3Q9Y5G1 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHGB3Q9Y5G1 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
PCDHGB3Q9Y5G1 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
PCDHGB3Q9Y5G1 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHGB3Q9Y5G1 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
PCDHGB3Q9Y5G1 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHGB3Q9Y5G1 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHGB3Q9Y5G1 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHGB3Q9Y5G1 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHGB3Q9Y5G1 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.31■■□□□ 1.32
PCDHGB3Q9Y5G1 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.31■■□□□ 1.32
PCDHGB3Q9Y5G1 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.31■■□□□ 1.32
PCDHGB3Q9Y5G1 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
PCDHGB3Q9Y5G1 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
PCDHGB3Q9Y5G1 AC091060.1-201ENST00000623524 1766 ntBASIC23.31■■□□□ 1.32
PCDHGB3Q9Y5G1 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHGB3Q9Y5G1 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHGB3Q9Y5G1 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHGB3Q9Y5G1 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHGB3Q9Y5G1 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHGB3Q9Y5G1 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHGB3Q9Y5G1 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHGB3Q9Y5G1 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHGB3Q9Y5G1 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHGB3Q9Y5G1 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHGB3Q9Y5G1 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.29■■□□□ 1.32
PCDHGB3Q9Y5G1 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGB3Q9Y5G1 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGB3Q9Y5G1 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGB3Q9Y5G1 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.28■■□□□ 1.32
PCDHGB3Q9Y5G1 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGB3Q9Y5G1 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGB3Q9Y5G1 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHGB3Q9Y5G1 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC23.27■■□□□ 1.32
PCDHGB3Q9Y5G1 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
PCDHGB3Q9Y5G1 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.26■■□□□ 1.31
PCDHGB3Q9Y5G1 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.26■■□□□ 1.31
PCDHGB3Q9Y5G1 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.25■■□□□ 1.31
PCDHGB3Q9Y5G1 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHGB3Q9Y5G1 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
PCDHGB3Q9Y5G1 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGB3Q9Y5G1 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.24■■□□□ 1.31
PCDHGB3Q9Y5G1 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC23.24■■□□□ 1.31
PCDHGB3Q9Y5G1 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGB3Q9Y5G1 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGB3Q9Y5G1 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
PCDHGB3Q9Y5G1 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
PCDHGB3Q9Y5G1 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.23■■□□□ 1.31
PCDHGB3Q9Y5G1 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.22■■□□□ 1.31
PCDHGB3Q9Y5G1 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PCDHGB3Q9Y5G1 AC008813.1-201ENST00000536597 885 ntBASIC23.22■■□□□ 1.31
PCDHGB3Q9Y5G1 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHGB3Q9Y5G1 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.21■■□□□ 1.31
PCDHGB3Q9Y5G1 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.21■■□□□ 1.31
PCDHGB3Q9Y5G1 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.21■■□□□ 1.31
PCDHGB3Q9Y5G1 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHGB3Q9Y5G1 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
PCDHGB3Q9Y5G1 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHGB3Q9Y5G1 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.21■■□□□ 1.31
PCDHGB3Q9Y5G1 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.2■■□□□ 1.31
PCDHGB3Q9Y5G1 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHGB3Q9Y5G1 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.2■■□□□ 1.3
PCDHGB3Q9Y5G1 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
PCDHGB3Q9Y5G1 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHGB3Q9Y5G1 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PCDHGB3Q9Y5G1 AC145676.1-201ENST00000514988 2004 ntBASIC23.19■■□□□ 1.3
PCDHGB3Q9Y5G1 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.19■■□□□ 1.3
PCDHGB3Q9Y5G1 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
PCDHGB3Q9Y5G1 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.19■■□□□ 1.3
PCDHGB3Q9Y5G1 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHGB3Q9Y5G1 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHGB3Q9Y5G1 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC23.18■■□□□ 1.3
PCDHGB3Q9Y5G1 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.18■■□□□ 1.3
PCDHGB3Q9Y5G1 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHGB3Q9Y5G1 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHGB3Q9Y5G1 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
PCDHGB3Q9Y5G1 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHGB3Q9Y5G1 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
PCDHGB3Q9Y5G1 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
PCDHGB3Q9Y5G1 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHGB3Q9Y5G1 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.16■■□□□ 1.3
PCDHGB3Q9Y5G1 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.15■■□□□ 1.3
PCDHGB3Q9Y5G1 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHGB3Q9Y5G1 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.14■■□□□ 1.3
PCDHGB3Q9Y5G1 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
PCDHGB3Q9Y5G1 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC23.14■■□□□ 1.29
PCDHGB3Q9Y5G1 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC23.14■■□□□ 1.29
PCDHGB3Q9Y5G1 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.14■■□□□ 1.29
PCDHGB3Q9Y5G1 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
PCDHGB3Q9Y5G1 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.13■■□□□ 1.29
PCDHGB3Q9Y5G1 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.13■■□□□ 1.29
PCDHGB3Q9Y5G1 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms