Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 AC068473.5-201ENST00000616428 2072 ntBASIC23.26■■□□□ 1.31
NR1H4Q96RI1 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
NR1H4Q96RI1 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
NR1H4Q96RI1 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
NR1H4Q96RI1 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
NR1H4Q96RI1 CLDN5-201ENST00000403084 2357 ntBASIC23.25■■□□□ 1.31
NR1H4Q96RI1 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
NR1H4Q96RI1 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
NR1H4Q96RI1 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
NR1H4Q96RI1 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
NR1H4Q96RI1 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
NR1H4Q96RI1 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23.24■■□□□ 1.31
NR1H4Q96RI1 AC142381.3-201ENST00000568208 1670 ntBASIC23.24■■□□□ 1.31
NR1H4Q96RI1 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
NR1H4Q96RI1 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
NR1H4Q96RI1 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
NR1H4Q96RI1 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC23.23■■□□□ 1.31
NR1H4Q96RI1 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
NR1H4Q96RI1 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
NR1H4Q96RI1 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
NR1H4Q96RI1 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
NR1H4Q96RI1 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
NR1H4Q96RI1 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
NR1H4Q96RI1 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NR1H4Q96RI1 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NR1H4Q96RI1 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
NR1H4Q96RI1 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.21■■□□□ 1.31
NR1H4Q96RI1 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
NR1H4Q96RI1 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
NR1H4Q96RI1 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
NR1H4Q96RI1 AL139125.2-201ENST00000623134 1869 ntBASIC23.21■■□□□ 1.31
NR1H4Q96RI1 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
NR1H4Q96RI1 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC23.21■■□□□ 1.31
NR1H4Q96RI1 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
NR1H4Q96RI1 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
NR1H4Q96RI1 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NR1H4Q96RI1 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NR1H4Q96RI1 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NR1H4Q96RI1 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
NR1H4Q96RI1 AP002414.2-202ENST00000590929 1450 ntBASIC23.19■■□□□ 1.3
NR1H4Q96RI1 AL031258.1-201ENST00000623562 325 ntBASIC23.19■■□□□ 1.3
NR1H4Q96RI1 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
NR1H4Q96RI1 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
NR1H4Q96RI1 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC23.19■■□□□ 1.3
NR1H4Q96RI1 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NR1H4Q96RI1 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.18■■□□□ 1.3
NR1H4Q96RI1 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.18■■□□□ 1.3
NR1H4Q96RI1 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC23.17■■□□□ 1.3
NR1H4Q96RI1 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NR1H4Q96RI1 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.17■■□□□ 1.3
NR1H4Q96RI1 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NR1H4Q96RI1 EBPL-203ENST00000378270 579 ntTSL 2 BASIC23.16■■□□□ 1.3
NR1H4Q96RI1 AP002365.1-201ENST00000603448 772 ntBASIC23.16■■□□□ 1.3
NR1H4Q96RI1 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
NR1H4Q96RI1 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NR1H4Q96RI1 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NR1H4Q96RI1 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
NR1H4Q96RI1 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
NR1H4Q96RI1 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
NR1H4Q96RI1 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC23.14■■□□□ 1.29
NR1H4Q96RI1 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
NR1H4Q96RI1 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
NR1H4Q96RI1 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
NR1H4Q96RI1 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
NR1H4Q96RI1 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
NR1H4Q96RI1 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
NR1H4Q96RI1 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
NR1H4Q96RI1 AC100797.4-201ENST00000631653 1827 ntBASIC23.12■■□□□ 1.29
NR1H4Q96RI1 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
NR1H4Q96RI1 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
NR1H4Q96RI1 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
NR1H4Q96RI1 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
NR1H4Q96RI1 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC23.11■■□□□ 1.29
NR1H4Q96RI1 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC23.11■■□□□ 1.29
NR1H4Q96RI1 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
NR1H4Q96RI1 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.11■■□□□ 1.29
NR1H4Q96RI1 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.11■■□□□ 1.29
NR1H4Q96RI1 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NR1H4Q96RI1 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NR1H4Q96RI1 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.1■■□□□ 1.29
NR1H4Q96RI1 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.1■■□□□ 1.29
NR1H4Q96RI1 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC23.1■■□□□ 1.29
NR1H4Q96RI1 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
NR1H4Q96RI1 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
NR1H4Q96RI1 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
NR1H4Q96RI1 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NR1H4Q96RI1 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
NR1H4Q96RI1 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NR1H4Q96RI1 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
NR1H4Q96RI1 CASK-201ENST00000378154 2494 ntTSL 5 BASIC23.09■■□□□ 1.29
NR1H4Q96RI1 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.09■■□□□ 1.29
NR1H4Q96RI1 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NR1H4Q96RI1 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.08■■□□□ 1.29
NR1H4Q96RI1 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.08■■□□□ 1.29
NR1H4Q96RI1 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
NR1H4Q96RI1 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
NR1H4Q96RI1 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
NR1H4Q96RI1 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
NR1H4Q96RI1 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC23.07■■□□□ 1.28
NR1H4Q96RI1 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms