Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.93■■□□□ 1.1
CCDC58Q4VC31 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC58Q4VC31 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
CCDC58Q4VC31 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
CCDC58Q4VC31 AC005559.1-201ENST00000589661 871 ntBASIC21.93■■□□□ 1.1
CCDC58Q4VC31 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
CCDC58Q4VC31 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.92■■□□□ 1.1
CCDC58Q4VC31 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC58Q4VC31 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC21.92■■□□□ 1.1
CCDC58Q4VC31 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.92■■□□□ 1.1
CCDC58Q4VC31 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.92■■□□□ 1.1
CCDC58Q4VC31 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
CCDC58Q4VC31 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC58Q4VC31 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC58Q4VC31 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC58Q4VC31 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC58Q4VC31 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC58Q4VC31 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC58Q4VC31 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.9■■□□□ 1.1
CCDC58Q4VC31 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC58Q4VC31 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC58Q4VC31 AP004609.3-201ENST00000610705 1884 ntBASIC21.9■■□□□ 1.1
CCDC58Q4VC31 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.89■■□□□ 1.09
CCDC58Q4VC31 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC58Q4VC31 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.88■■□□□ 1.09
CCDC58Q4VC31 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC58Q4VC31 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC58Q4VC31 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC58Q4VC31 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC58Q4VC31 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC58Q4VC31 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC58Q4VC31 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC58Q4VC31 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC58Q4VC31 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
CCDC58Q4VC31 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC58Q4VC31 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.85■■□□□ 1.09
CCDC58Q4VC31 MIR6090-201ENST00000622481 60 ntBASIC21.85■■□□□ 1.09
CCDC58Q4VC31 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.85■■□□□ 1.09
CCDC58Q4VC31 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
CCDC58Q4VC31 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.84■■□□□ 1.09
CCDC58Q4VC31 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC58Q4VC31 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC58Q4VC31 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC58Q4VC31 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC58Q4VC31 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC58Q4VC31 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC58Q4VC31 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC58Q4VC31 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC58Q4VC31 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC58Q4VC31 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC58Q4VC31 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.82■■□□□ 1.08
CCDC58Q4VC31 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.82■■□□□ 1.08
CCDC58Q4VC31 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.82■■□□□ 1.08
CCDC58Q4VC31 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC58Q4VC31 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC58Q4VC31 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC58Q4VC31 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC58Q4VC31 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC58Q4VC31 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC58Q4VC31 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC58Q4VC31 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC58Q4VC31 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC58Q4VC31 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CCDC58Q4VC31 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
CCDC58Q4VC31 AC142472.1-201ENST00000612013 1741 ntBASIC21.8■■□□□ 1.08
CCDC58Q4VC31 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC58Q4VC31 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.8■■□□□ 1.08
CCDC58Q4VC31 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC58Q4VC31 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC58Q4VC31 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC58Q4VC31 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC58Q4VC31 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC58Q4VC31 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
CCDC58Q4VC31 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.79■■□□□ 1.08
CCDC58Q4VC31 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC58Q4VC31 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC58Q4VC31 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC58Q4VC31 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC58Q4VC31 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC58Q4VC31 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC58Q4VC31 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC58Q4VC31 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC58Q4VC31 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC58Q4VC31 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC58Q4VC31 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC58Q4VC31 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC58Q4VC31 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC58Q4VC31 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.77■■□□□ 1.08
CCDC58Q4VC31 SUZ12P1-203ENST00000578195 985 ntBASIC21.77■■□□□ 1.08
CCDC58Q4VC31 CALM3-209ENST00000597743 577 ntTSL 4 BASIC21.77■■□□□ 1.08
CCDC58Q4VC31 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
CCDC58Q4VC31 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
CCDC58Q4VC31 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.76■■□□□ 1.07
CCDC58Q4VC31 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC58Q4VC31 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
CCDC58Q4VC31 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.76■■□□□ 1.07
CCDC58Q4VC31 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC58Q4VC31 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC58Q4VC31 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC58Q4VC31 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms