Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
CCDC40Q4G0X9 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC27.11■■□□□ 1.93
CCDC40Q4G0X9 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CCDC40Q4G0X9 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC27.11■■□□□ 1.93
CCDC40Q4G0X9 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CCDC40Q4G0X9 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
CCDC40Q4G0X9 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC27.11■■□□□ 1.93
CCDC40Q4G0X9 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CCDC40Q4G0X9 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC27.11■■□□□ 1.93
CCDC40Q4G0X9 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC27.1■■□□□ 1.93
CCDC40Q4G0X9 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC27.1■■□□□ 1.93
CCDC40Q4G0X9 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC27.1■■□□□ 1.93
CCDC40Q4G0X9 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
CCDC40Q4G0X9 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
CCDC40Q4G0X9 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC27.09■■□□□ 1.93
CCDC40Q4G0X9 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC27.09■■□□□ 1.93
CCDC40Q4G0X9 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC27.08■■□□□ 1.93
CCDC40Q4G0X9 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
CCDC40Q4G0X9 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC27.08■■□□□ 1.93
CCDC40Q4G0X9 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
CCDC40Q4G0X9 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
CCDC40Q4G0X9 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
CCDC40Q4G0X9 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC27.07■■□□□ 1.92
CCDC40Q4G0X9 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
CCDC40Q4G0X9 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
CCDC40Q4G0X9 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC27.06■■□□□ 1.92
CCDC40Q4G0X9 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC40Q4G0X9 AC135731.1-201ENST00000569415 2548 ntBASIC27.06■■□□□ 1.92
CCDC40Q4G0X9 AGPS-202ENST00000409888 815 ntTSL 4 BASIC27.06■■□□□ 1.92
CCDC40Q4G0X9 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC40Q4G0X9 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC40Q4G0X9 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC27.05■■□□□ 1.92
CCDC40Q4G0X9 AC142472.1-201ENST00000612013 1741 ntBASIC27.05■■□□□ 1.92
CCDC40Q4G0X9 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC40Q4G0X9 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC27.05■■□□□ 1.92
CCDC40Q4G0X9 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC40Q4G0X9 SHF-207ENST00000560540 2062 ntTSL 5 BASIC27.05■■□□□ 1.92
CCDC40Q4G0X9 MIR219A2-201ENST00000608502 1504 ntBASIC27.05■■□□□ 1.92
CCDC40Q4G0X9 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC40Q4G0X9 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC40Q4G0X9 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC27.04■■□□□ 1.92
CCDC40Q4G0X9 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC27.04■■□□□ 1.92
CCDC40Q4G0X9 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC27.04■■□□□ 1.92
CCDC40Q4G0X9 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC27.03■■□□□ 1.92
CCDC40Q4G0X9 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC27.03■■□□□ 1.92
CCDC40Q4G0X9 CR559946.2-201ENST00000623684 991 ntBASIC27.03■■□□□ 1.92
CCDC40Q4G0X9 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC27.02■■□□□ 1.92
CCDC40Q4G0X9 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC27.02■■□□□ 1.92
CCDC40Q4G0X9 HLA-V-202ENST00000446817 847 ntBASIC27.02■■□□□ 1.92
CCDC40Q4G0X9 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC27.02■■□□□ 1.92
CCDC40Q4G0X9 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
CCDC40Q4G0X9 AC091060.1-201ENST00000623524 1766 ntBASIC27.02■■□□□ 1.92
CCDC40Q4G0X9 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC27.01■■□□□ 1.92
CCDC40Q4G0X9 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.92
CCDC40Q4G0X9 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC40Q4G0X9 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC40Q4G0X9 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC40Q4G0X9 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC27.01■■□□□ 1.91
CCDC40Q4G0X9 AC148477.6-201ENST00000623746 465 ntBASIC27.01■■□□□ 1.91
CCDC40Q4G0X9 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC40Q4G0X9 CHST11-203ENST00000547956 936 ntTSL 2 BASIC27■■□□□ 1.91
CCDC40Q4G0X9 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC27■■□□□ 1.91
CCDC40Q4G0X9 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
CCDC40Q4G0X9 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC27■■□□□ 1.91
CCDC40Q4G0X9 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
CCDC40Q4G0X9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
CCDC40Q4G0X9 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
CCDC40Q4G0X9 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CCDC40Q4G0X9 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
CCDC40Q4G0X9 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC26.98■■□□□ 1.91
CCDC40Q4G0X9 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CCDC40Q4G0X9 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC26.98■■□□□ 1.91
CCDC40Q4G0X9 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC40Q4G0X9 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC40Q4G0X9 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
CCDC40Q4G0X9 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC40Q4G0X9 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC26.96■■□□□ 1.91
CCDC40Q4G0X9 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
CCDC40Q4G0X9 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
CCDC40Q4G0X9 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC26.96■■□□□ 1.91
CCDC40Q4G0X9 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CCDC40Q4G0X9 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CCDC40Q4G0X9 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
CCDC40Q4G0X9 GDI1-215ENST00000630693 786 ntTSL 4 BASIC26.95■■□□□ 1.9
CCDC40Q4G0X9 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC26.95■■□□□ 1.9
CCDC40Q4G0X9 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC26.95■■□□□ 1.9
CCDC40Q4G0X9 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
CCDC40Q4G0X9 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
CCDC40Q4G0X9 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC40Q4G0X9 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC26.94■■□□□ 1.9
CCDC40Q4G0X9 MIR3648-2-201ENST00000581792 180 ntBASIC26.94■■□□□ 1.9
CCDC40Q4G0X9 MIR3648-1-201ENST00000615959 180 ntBASIC26.94■■□□□ 1.9
CCDC40Q4G0X9 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC26.94■■□□□ 1.9
CCDC40Q4G0X9 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CCDC40Q4G0X9 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
CCDC40Q4G0X9 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC26.93■■□□□ 1.9
CCDC40Q4G0X9 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.9
CCDC40Q4G0X9 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC26.92■■□□□ 1.9
CCDC40Q4G0X9 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC40Q4G0X9 MACF1-219ENST00000484793 834 ntTSL 2 BASIC26.92■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 185.8 ms