Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 DUX4L12-201ENST00000614593 1267 ntBASIC21.64■■□□□ 1.05
CX3CR1P49238 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC21.64■■□□□ 1.05
CX3CR1P49238 DUX4L14-201ENST00000621227 1267 ntBASIC21.64■■□□□ 1.05
CX3CR1P49238 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.64■■□□□ 1.05
CX3CR1P49238 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CX3CR1P49238 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CX3CR1P49238 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CX3CR1P49238 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CX3CR1P49238 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
CX3CR1P49238 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CX3CR1P49238 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CX3CR1P49238 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CX3CR1P49238 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.62■■□□□ 1.05
CX3CR1P49238 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CX3CR1P49238 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.61■■□□□ 1.05
CX3CR1P49238 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
CX3CR1P49238 ZNRF2P2-203ENST00000454624 420 ntBASIC21.61■■□□□ 1.05
CX3CR1P49238 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CX3CR1P49238 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.6■■□□□ 1.05
CX3CR1P49238 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CX3CR1P49238 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.6■■□□□ 1.05
CX3CR1P49238 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.6■■□□□ 1.05
CX3CR1P49238 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.6■■□□□ 1.05
CX3CR1P49238 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CX3CR1P49238 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CX3CR1P49238 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC21.59■■□□□ 1.05
CX3CR1P49238 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CX3CR1P49238 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC21.58■■□□□ 1.04
CX3CR1P49238 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CX3CR1P49238 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.57■■□□□ 1.04
CX3CR1P49238 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CX3CR1P49238 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CX3CR1P49238 AC008813.1-201ENST00000536597 885 ntBASIC21.57■■□□□ 1.04
CX3CR1P49238 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CX3CR1P49238 AC142472.1-201ENST00000612013 1741 ntBASIC21.57■■□□□ 1.04
CX3CR1P49238 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
CX3CR1P49238 AC091060.1-201ENST00000623524 1766 ntBASIC21.56■■□□□ 1.04
CX3CR1P49238 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.56■■□□□ 1.04
CX3CR1P49238 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CX3CR1P49238 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CX3CR1P49238 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CX3CR1P49238 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
CX3CR1P49238 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CX3CR1P49238 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.55■■□□□ 1.04
CX3CR1P49238 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CX3CR1P49238 HES6-205ENST00000409356 528 ntTSL 2 BASIC21.54■■□□□ 1.04
CX3CR1P49238 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CX3CR1P49238 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.54■■□□□ 1.04
CX3CR1P49238 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
CX3CR1P49238 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
CX3CR1P49238 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.53■■□□□ 1.04
CX3CR1P49238 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CX3CR1P49238 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CX3CR1P49238 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CX3CR1P49238 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC21.53■■□□□ 1.04
CX3CR1P49238 RNF166-209ENST00000567844 633 ntTSL 5 BASIC21.53■■□□□ 1.04
CX3CR1P49238 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.53■■□□□ 1.04
CX3CR1P49238 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC21.53■■□□□ 1.04
CX3CR1P49238 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CX3CR1P49238 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CX3CR1P49238 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CX3CR1P49238 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CX3CR1P49238 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
CX3CR1P49238 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CX3CR1P49238 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CX3CR1P49238 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC21.51■■□□□ 1.03
CX3CR1P49238 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.51■■□□□ 1.03
CX3CR1P49238 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CX3CR1P49238 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.51■■□□□ 1.03
CX3CR1P49238 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CX3CR1P49238 MIR219A2-201ENST00000608502 1504 ntBASIC21.5■■□□□ 1.03
CX3CR1P49238 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CX3CR1P49238 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CX3CR1P49238 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CX3CR1P49238 ABHD17AP4-201ENST00000411545 909 ntBASIC21.5■■□□□ 1.03
CX3CR1P49238 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CX3CR1P49238 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CX3CR1P49238 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CX3CR1P49238 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CX3CR1P49238 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CX3CR1P49238 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CX3CR1P49238 AGPS-202ENST00000409888 815 ntTSL 4 BASIC21.49■■□□□ 1.03
CX3CR1P49238 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC21.49■■□□□ 1.03
CX3CR1P49238 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CX3CR1P49238 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.49■■□□□ 1.03
CX3CR1P49238 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CX3CR1P49238 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CX3CR1P49238 AC148477.6-201ENST00000623746 465 ntBASIC21.48■■□□□ 1.03
CX3CR1P49238 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CX3CR1P49238 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CX3CR1P49238 AC145676.1-201ENST00000514988 2004 ntBASIC21.48■■□□□ 1.03
CX3CR1P49238 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.47■■□□□ 1.03
CX3CR1P49238 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
CX3CR1P49238 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.47■■□□□ 1.03
CX3CR1P49238 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CX3CR1P49238 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CX3CR1P49238 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.47■■□□□ 1.03
CX3CR1P49238 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.47■■□□□ 1.03
CX3CR1P49238 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CX3CR1P49238 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms