Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC31.12■■■□□ 2.57
BRCA1P38398 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC31.11■■■□□ 2.57
BRCA1P38398 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
BRCA1P38398 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC31.11■■■□□ 2.57
BRCA1P38398 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
BRCA1P38398 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC31.11■■■□□ 2.57
BRCA1P38398 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC31.1■■■□□ 2.57
BRCA1P38398 PFN2-211ENST00000489155 636 ntTSL 4 BASIC31.1■■■□□ 2.57
BRCA1P38398 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
BRCA1P38398 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC31.1■■■□□ 2.57
BRCA1P38398 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC31.09■■■□□ 2.57
BRCA1P38398 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC31.09■■■□□ 2.57
BRCA1P38398 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC31.09■■■□□ 2.57
BRCA1P38398 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
BRCA1P38398 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
BRCA1P38398 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
BRCA1P38398 AL359258.2-201ENST00000564063 1566 ntBASIC31.08■■■□□ 2.57
BRCA1P38398 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
BRCA1P38398 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC31.08■■■□□ 2.57
BRCA1P38398 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC31.08■■■□□ 2.57
BRCA1P38398 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
BRCA1P38398 IDNK-201ENST00000376417 511 ntTSL 5 BASIC31.07■■■□□ 2.56
BRCA1P38398 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
BRCA1P38398 IDNK-203ENST00000405990 629 ntTSL 2 BASIC31.07■■■□□ 2.56
BRCA1P38398 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
BRCA1P38398 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
BRCA1P38398 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
BRCA1P38398 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC31.05■■■□□ 2.56
BRCA1P38398 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
BRCA1P38398 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC31.04■■■□□ 2.56
BRCA1P38398 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
BRCA1P38398 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
BRCA1P38398 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC31.03■■■□□ 2.56
BRCA1P38398 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
BRCA1P38398 MIR3960-201ENST00000583311 91 ntBASIC31.01■■■□□ 2.56
BRCA1P38398 AL031848.2-201ENST00000607670 837 ntBASIC31.01■■■□□ 2.56
BRCA1P38398 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
BRCA1P38398 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC31■■■□□ 2.55
BRCA1P38398 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC30.99■■■□□ 2.55
BRCA1P38398 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
BRCA1P38398 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
BRCA1P38398 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
BRCA1P38398 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
BRCA1P38398 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
BRCA1P38398 RNF146-205ENST00000477776 762 ntTSL 3 BASIC30.96■■■□□ 2.55
BRCA1P38398 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC30.96■■■□□ 2.55
BRCA1P38398 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC30.96■■■□□ 2.55
BRCA1P38398 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
BRCA1P38398 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC30.95■■■□□ 2.55
BRCA1P38398 Z92544.1-202ENST00000571933 1220 ntBASIC30.95■■■□□ 2.55
BRCA1P38398 GRAMD4P7-201ENST00000578182 1232 ntBASIC30.95■■■□□ 2.55
BRCA1P38398 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
BRCA1P38398 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC30.95■■■□□ 2.54
BRCA1P38398 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC30.94■■■□□ 2.54
BRCA1P38398 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
BRCA1P38398 MTX2-204ENST00000443241 799 ntTSL 3 BASIC30.93■■■□□ 2.54
BRCA1P38398 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC30.93■■■□□ 2.54
BRCA1P38398 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC30.93■■■□□ 2.54
BRCA1P38398 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC30.93■■■□□ 2.54
BRCA1P38398 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC30.93■■■□□ 2.54
BRCA1P38398 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC30.93■■■□□ 2.54
BRCA1P38398 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC30.92■■■□□ 2.54
BRCA1P38398 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
BRCA1P38398 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
BRCA1P38398 MIR638-201ENST00000385237 100 ntBASIC30.92■■■□□ 2.54
BRCA1P38398 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
BRCA1P38398 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
BRCA1P38398 CREM-229ENST00000474362 1030 ntTSL 2 BASIC30.91■■■□□ 2.54
BRCA1P38398 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
BRCA1P38398 TK2-216ENST00000564917 1156 ntTSL 3 BASIC30.89■■■□□ 2.54
BRCA1P38398 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC30.89■■■□□ 2.54
BRCA1P38398 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.54
BRCA1P38398 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.89■■■□□ 2.54
BRCA1P38398 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC30.89■■■□□ 2.53
BRCA1P38398 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
BRCA1P38398 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC30.88■■■□□ 2.53
BRCA1P38398 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC30.88■■■□□ 2.53
BRCA1P38398 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC30.88■■■□□ 2.53
BRCA1P38398 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
BRCA1P38398 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC30.86■■■□□ 2.53
BRCA1P38398 AC008406.3-201ENST00000620001 1374 ntBASIC30.86■■■□□ 2.53
BRCA1P38398 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
BRCA1P38398 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
BRCA1P38398 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC30.86■■■□□ 2.53
BRCA1P38398 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC30.86■■■□□ 2.53
BRCA1P38398 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC30.86■■■□□ 2.53
BRCA1P38398 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC30.86■■■□□ 2.53
BRCA1P38398 AC100797.4-201ENST00000631653 1827 ntBASIC30.86■■■□□ 2.53
BRCA1P38398 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC30.86■■■□□ 2.53
BRCA1P38398 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC30.85■■■□□ 2.53
BRCA1P38398 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC30.85■■■□□ 2.53
BRCA1P38398 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.85■■■□□ 2.53
BRCA1P38398 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
BRCA1P38398 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
BRCA1P38398 AC239859.2-201ENST00000444165 318 ntBASIC30.84■■■□□ 2.53
BRCA1P38398 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
BRCA1P38398 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
BRCA1P38398 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC30.84■■■□□ 2.53
BRCA1P38398 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
BRCA1P38398 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms