Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC31.12■■■□□ 2.57
BRCA1P38398 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC31.11■■■□□ 2.57
BRCA1P38398 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
BRCA1P38398 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC31.11■■■□□ 2.57
BRCA1P38398 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
BRCA1P38398 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC31.11■■■□□ 2.57
BRCA1P38398 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC31.1■■■□□ 2.57
BRCA1P38398 PFN2-211ENST00000489155 636 ntTSL 4 BASIC31.1■■■□□ 2.57
BRCA1P38398 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
BRCA1P38398 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC31.1■■■□□ 2.57
BRCA1P38398 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC31.09■■■□□ 2.57
BRCA1P38398 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC31.09■■■□□ 2.57
BRCA1P38398 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC31.09■■■□□ 2.57
BRCA1P38398 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
BRCA1P38398 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
BRCA1P38398 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
BRCA1P38398 AL359258.2-201ENST00000564063 1566 ntBASIC31.08■■■□□ 2.57
BRCA1P38398 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
BRCA1P38398 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC31.08■■■□□ 2.57
BRCA1P38398 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC31.08■■■□□ 2.57
BRCA1P38398 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
BRCA1P38398 IDNK-201ENST00000376417 511 ntTSL 5 BASIC31.07■■■□□ 2.56
BRCA1P38398 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
BRCA1P38398 IDNK-203ENST00000405990 629 ntTSL 2 BASIC31.07■■■□□ 2.56
BRCA1P38398 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
BRCA1P38398 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
BRCA1P38398 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
BRCA1P38398 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC31.05■■■□□ 2.56
BRCA1P38398 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
BRCA1P38398 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC31.04■■■□□ 2.56
BRCA1P38398 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
BRCA1P38398 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
BRCA1P38398 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC31.03■■■□□ 2.56
BRCA1P38398 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
BRCA1P38398 MIR3960-201ENST00000583311 91 ntBASIC31.01■■■□□ 2.56
BRCA1P38398 AL031848.2-201ENST00000607670 837 ntBASIC31.01■■■□□ 2.56
BRCA1P38398 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
BRCA1P38398 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC31■■■□□ 2.55
BRCA1P38398 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC30.99■■■□□ 2.55
BRCA1P38398 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
BRCA1P38398 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
BRCA1P38398 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
BRCA1P38398 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
BRCA1P38398 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
BRCA1P38398 RNF146-205ENST00000477776 762 ntTSL 3 BASIC30.96■■■□□ 2.55
BRCA1P38398 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC30.96■■■□□ 2.55
BRCA1P38398 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC30.96■■■□□ 2.55
BRCA1P38398 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
BRCA1P38398 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC30.95■■■□□ 2.55
BRCA1P38398 Z92544.1-202ENST00000571933 1220 ntBASIC30.95■■■□□ 2.55
BRCA1P38398 GRAMD4P7-201ENST00000578182 1232 ntBASIC30.95■■■□□ 2.55
BRCA1P38398 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
BRCA1P38398 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC30.95■■■□□ 2.54
BRCA1P38398 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC30.94■■■□□ 2.54
BRCA1P38398 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
BRCA1P38398 MTX2-204ENST00000443241 799 ntTSL 3 BASIC30.93■■■□□ 2.54
BRCA1P38398 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC30.93■■■□□ 2.54
BRCA1P38398 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC30.93■■■□□ 2.54
BRCA1P38398 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC30.93■■■□□ 2.54
BRCA1P38398 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC30.93■■■□□ 2.54
BRCA1P38398 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC30.93■■■□□ 2.54
BRCA1P38398 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC30.92■■■□□ 2.54
BRCA1P38398 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
BRCA1P38398 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
BRCA1P38398 MIR638-201ENST00000385237 100 ntBASIC30.92■■■□□ 2.54
BRCA1P38398 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
BRCA1P38398 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
BRCA1P38398 CREM-229ENST00000474362 1030 ntTSL 2 BASIC30.91■■■□□ 2.54
BRCA1P38398 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
BRCA1P38398 TK2-216ENST00000564917 1156 ntTSL 3 BASIC30.89■■■□□ 2.54
BRCA1P38398 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC30.89■■■□□ 2.54
BRCA1P38398 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.54
BRCA1P38398 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.89■■■□□ 2.54
BRCA1P38398 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC30.89■■■□□ 2.53
BRCA1P38398 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
BRCA1P38398 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC30.88■■■□□ 2.53
BRCA1P38398 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC30.88■■■□□ 2.53
BRCA1P38398 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC30.88■■■□□ 2.53
BRCA1P38398 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
BRCA1P38398 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC30.86■■■□□ 2.53
BRCA1P38398 AC008406.3-201ENST00000620001 1374 ntBASIC30.86■■■□□ 2.53
BRCA1P38398 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
BRCA1P38398 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
BRCA1P38398 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC30.86■■■□□ 2.53
BRCA1P38398 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC30.86■■■□□ 2.53
BRCA1P38398 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC30.86■■■□□ 2.53
BRCA1P38398 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC30.86■■■□□ 2.53
BRCA1P38398 AC100797.4-201ENST00000631653 1827 ntBASIC30.86■■■□□ 2.53
BRCA1P38398 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC30.86■■■□□ 2.53
BRCA1P38398 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC30.85■■■□□ 2.53
BRCA1P38398 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC30.85■■■□□ 2.53
BRCA1P38398 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.85■■■□□ 2.53
BRCA1P38398 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
BRCA1P38398 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
BRCA1P38398 AC239859.2-201ENST00000444165 318 ntBASIC30.84■■■□□ 2.53
BRCA1P38398 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
BRCA1P38398 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
BRCA1P38398 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC30.84■■■□□ 2.53
BRCA1P38398 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
BRCA1P38398 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms