Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SHMT1P34896 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SHMT1P34896 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC29.32■■■□□ 2.28
SHMT1P34896 GFER-205ENST00000569451 517 ntTSL 5 BASIC29.31■■■□□ 2.28
SHMT1P34896 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC29.3■■■□□ 2.28
SHMT1P34896 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
SHMT1P34896 ATP5G2P3-201ENST00000429083 425 ntBASIC29.3■■■□□ 2.28
SHMT1P34896 AL592293.1-201ENST00000502889 1188 ntBASIC29.3■■■□□ 2.28
SHMT1P34896 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
SHMT1P34896 AC026202.3-201ENST00000600805 1127 ntBASIC29.3■■■□□ 2.28
SHMT1P34896 AC133552.2-201ENST00000619106 1032 ntBASIC29.3■■■□□ 2.28
SHMT1P34896 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC29.3■■■□□ 2.28
SHMT1P34896 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SHMT1P34896 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
SHMT1P34896 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC29.29■■■□□ 2.28
SHMT1P34896 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC29.29■■■□□ 2.28
SHMT1P34896 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
SHMT1P34896 TSPY13P-201ENST00000338964 914 ntBASIC29.28■■■□□ 2.28
SHMT1P34896 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
SHMT1P34896 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC29.28■■■□□ 2.28
SHMT1P34896 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC29.28■■■□□ 2.28
SHMT1P34896 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC29.27■■■□□ 2.28
SHMT1P34896 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC29.26■■■□□ 2.27
SHMT1P34896 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
SHMT1P34896 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC29.26■■■□□ 2.27
SHMT1P34896 AC129492.7-201ENST00000622992 756 ntBASIC29.26■■■□□ 2.27
SHMT1P34896 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC29.26■■■□□ 2.27
SHMT1P34896 RP9P-202ENST00000450133 1212 ntBASIC29.25■■■□□ 2.27
SHMT1P34896 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SHMT1P34896 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC29.24■■■□□ 2.27
SHMT1P34896 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC29.24■■■□□ 2.27
SHMT1P34896 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SHMT1P34896 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC29.24■■■□□ 2.27
SHMT1P34896 WHAMMP3-201ENST00000611636 1609 ntBASIC29.24■■■□□ 2.27
SHMT1P34896 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC29.24■■■□□ 2.27
SHMT1P34896 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SHMT1P34896 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SHMT1P34896 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
SHMT1P34896 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC29.23■■■□□ 2.27
SHMT1P34896 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC29.23■■■□□ 2.27
SHMT1P34896 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
SHMT1P34896 PFN2-211ENST00000489155 636 ntTSL 4 BASIC29.23■■■□□ 2.27
SHMT1P34896 AC093536.1-201ENST00000569153 554 ntBASIC29.23■■■□□ 2.27
SHMT1P34896 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
SHMT1P34896 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC29.23■■■□□ 2.27
SHMT1P34896 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
SHMT1P34896 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC29.22■■■□□ 2.27
SHMT1P34896 RAP2CP1-202ENST00000605179 643 ntBASIC29.22■■■□□ 2.27
SHMT1P34896 AL359504.2-201ENST00000605506 1601 ntBASIC29.21■■■□□ 2.27
SHMT1P34896 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC29.21■■■□□ 2.27
SHMT1P34896 GUK1-208ENST00000366728 842 ntTSL 2 BASIC29.21■■■□□ 2.27
SHMT1P34896 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC29.21■■■□□ 2.27
SHMT1P34896 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC29.21■■■□□ 2.27
SHMT1P34896 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC29.21■■■□□ 2.27
SHMT1P34896 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC29.21■■■□□ 2.27
SHMT1P34896 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC29.2■■■□□ 2.27
SHMT1P34896 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC29.2■■■□□ 2.26
SHMT1P34896 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
SHMT1P34896 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC29.19■■■□□ 2.26
SHMT1P34896 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
SHMT1P34896 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC29.18■■■□□ 2.26
SHMT1P34896 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC29.18■■■□□ 2.26
SHMT1P34896 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SHMT1P34896 HES4-204ENST00000484667 667 ntTSL 3 BASIC29.18■■■□□ 2.26
SHMT1P34896 MIR3960-201ENST00000583311 91 ntBASIC29.18■■■□□ 2.26
SHMT1P34896 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SHMT1P34896 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
SHMT1P34896 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
SHMT1P34896 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC29.17■■■□□ 2.26
SHMT1P34896 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC29.17■■■□□ 2.26
SHMT1P34896 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC29.17■■■□□ 2.26
SHMT1P34896 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
SHMT1P34896 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC29.16■■■□□ 2.26
SHMT1P34896 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC29.16■■■□□ 2.26
SHMT1P34896 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SHMT1P34896 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC29.16■■■□□ 2.26
SHMT1P34896 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
SHMT1P34896 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
SHMT1P34896 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
SHMT1P34896 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC29.15■■■□□ 2.26
SHMT1P34896 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
SHMT1P34896 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC29.14■■■□□ 2.25
SHMT1P34896 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC29.13■■■□□ 2.25
SHMT1P34896 DUX4L18-201ENST00000553347 1267 ntBASIC29.13■■■□□ 2.25
SHMT1P34896 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC29.13■■■□□ 2.25
SHMT1P34896 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
SHMT1P34896 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC29.12■■■□□ 2.25
SHMT1P34896 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC29.12■■■□□ 2.25
SHMT1P34896 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC29.11■■■□□ 2.25
SHMT1P34896 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
SHMT1P34896 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC29.11■■■□□ 2.25
SHMT1P34896 SPCS2P3-201ENST00000500401 656 ntBASIC29.11■■■□□ 2.25
SHMT1P34896 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
SHMT1P34896 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC29.11■■■□□ 2.25
SHMT1P34896 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHMT1P34896 DUX4L9-201ENST00000449051 1259 ntBASIC29.1■■■□□ 2.25
SHMT1P34896 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC29.1■■■□□ 2.25
SHMT1P34896 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHMT1P34896 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
SHMT1P34896 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC29.09■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms