Protein–RNA interactions for Protein: Q9Y5I7

CLDN16, Claudin-16, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN16Q9Y5I7 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 KRT8P47-201ENST00000604727 1398 ntBASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.83■□□□□ 0.28
CLDN16Q9Y5I7 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 AC100803.2-201ENST00000562459 1963 ntBASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 AC138028.4-201ENST00000564984 1845 ntBASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 FLJ13224-201ENST00000313737 1514 ntBASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 AL390961.4-201ENST00000623958 2535 ntBASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLDN16Q9Y5I7 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 LINC00265-3P-201ENST00000447588 903 ntBASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLDN16Q9Y5I7 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms