Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 AP003733.1-201ENST00000491725 852 ntBASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 AP000867.3-201ENST00000524675 377 ntBASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 AC005332.3-201ENST00000589904 676 ntBASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 AL390719.2-201ENST00000606993 987 ntBASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 AC090340.1-201ENST00000620778 4980 ntBASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA3Q9Y5H0 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 AP000997.3-201ENST00000623333 2250 ntBASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 AC018470.1-201ENST00000624790 3129 ntBASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 TOB2P1-201ENST00000469761 992 ntBASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 AC091304.2-201ENST00000564639 760 ntBASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 LINC01711-201ENST00000598340 967 ntBASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDHGA3Q9Y5H0 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.6■□□□□ 0.41
PCDHGA3Q9Y5H0 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA3Q9Y5H0 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.58■□□□□ 0.41
PCDHGA3Q9Y5H0 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHGA3Q9Y5H0 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms