Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 RCC2P3-201ENST00000418112 1537 ntBASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 AL121894.2-201ENST00000602977 491 ntBASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
PCDHB3Q9Y5E6 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHB3Q9Y5E6 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.77■□□□□ 0.43
PCDHB3Q9Y5E6 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHB3Q9Y5E6 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.77■□□□□ 0.43
PCDHB3Q9Y5E6 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHB3Q9Y5E6 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 HBZP1-201ENST00000354915 429 ntBASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 SEC1P-202ENST00000473944 940 ntBASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDHB3Q9Y5E6 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 DUSP5P1-201ENST00000441325 1139 ntBASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 ESPNP-201ENST00000270691 2015 ntBASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 KRT8P32-201ENST00000512863 1461 ntBASIC17.75■□□□□ 0.43
PCDHB3Q9Y5E6 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms