Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 POM121L3P-201ENST00000419331 1163 ntBASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 TSPY12P-201ENST00000421279 868 ntBASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TM9SF3Q9HD45 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 AC023511.2-201ENST00000618803 211 ntBASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TM9SF3Q9HD45 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 BNIP3P18-201ENST00000593976 575 ntBASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 AL049812.1-201ENST00000432563 2267 ntBASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TM9SF3Q9HD45 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
TM9SF3Q9HD45 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms