Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TSSC2-201ENST00000450217 709 ntBASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 AC004263.2-201ENST00000617183 678 ntBASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.96■□□□□ 0.46
TRIM39Q9HCM9 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.96■□□□□ 0.46
TRIM39Q9HCM9 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 AC090616.6-201ENST00000582640 721 ntBASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 AC093458.2-201ENST00000623150 629 ntBASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 AC090164.3-201ENST00000610780 2143 ntBASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM39Q9HCM9 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 CHCHD2P8-201ENST00000429873 447 ntBASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM39Q9HCM9 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 ATP5G2P1-201ENST00000433580 426 ntBASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms