Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC23.33■■□□□ 1.33
SHANK3Q9BYB0 RIN3-211ENST00000557762 517 ntTSL 3 BASIC23.33■■□□□ 1.33
SHANK3Q9BYB0 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC23.33■■□□□ 1.33
SHANK3Q9BYB0 NCF1C-201ENST00000438382 1427 ntBASIC23.33■■□□□ 1.33
SHANK3Q9BYB0 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
SHANK3Q9BYB0 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC23.33■■□□□ 1.33
SHANK3Q9BYB0 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
SHANK3Q9BYB0 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
SHANK3Q9BYB0 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
SHANK3Q9BYB0 AC211486.1-202ENST00000416371 468 ntBASIC23.33■■□□□ 1.32
SHANK3Q9BYB0 AC211476.1-201ENST00000503899 468 ntBASIC23.33■■□□□ 1.32
SHANK3Q9BYB0 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC23.33■■□□□ 1.32
SHANK3Q9BYB0 COX5A-206ENST00000568783 571 ntTSL 3 BASIC23.33■■□□□ 1.32
SHANK3Q9BYB0 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC23.33■■□□□ 1.32
SHANK3Q9BYB0 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.32
SHANK3Q9BYB0 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 TCAP-202ENST00000578283 583 ntTSL 5 BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC23.32■■□□□ 1.32
SHANK3Q9BYB0 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC23.31■■□□□ 1.32
SHANK3Q9BYB0 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SHANK3Q9BYB0 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC23.31■■□□□ 1.32
SHANK3Q9BYB0 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC23.31■■□□□ 1.32
SHANK3Q9BYB0 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
SHANK3Q9BYB0 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SHANK3Q9BYB0 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SHANK3Q9BYB0 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SHANK3Q9BYB0 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SHANK3Q9BYB0 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
SHANK3Q9BYB0 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SHANK3Q9BYB0 AC006504.4-201ENST00000592118 1568 ntBASIC23.31■■□□□ 1.32
SHANK3Q9BYB0 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 PGM5P2-202ENST00000637225 1043 ntBASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 AC092865.6-201ENST00000642101 219 ntBASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 AC097374.2-201ENST00000618617 1306 ntBASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 LBH-203ENST00000404397 543 ntTSL 4 BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 AL513190.1-201ENST00000621254 727 ntBASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SHANK3Q9BYB0 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 GMCL1P1-201ENST00000463439 1581 ntBASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 ATP6V0CP3-201ENST00000417255 467 ntBASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 WBP2-203ENST00000433525 928 ntTSL 2 BASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 MIR3687-2-201ENST00000577708 61 ntBASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 MTDHP5-201ENST00000598980 586 ntBASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 MIR3687-1-201ENST00000614492 61 ntBASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC23.29■■□□□ 1.32
SHANK3Q9BYB0 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SHANK3Q9BYB0 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SHANK3Q9BYB0 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC23.28■■□□□ 1.32
SHANK3Q9BYB0 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC23.28■■□□□ 1.32
SHANK3Q9BYB0 CFL1-202ENST00000524553 860 ntTSL 2 BASIC23.28■■□□□ 1.32
SHANK3Q9BYB0 RFPL4AP1-201ENST00000530883 850 ntBASIC23.28■■□□□ 1.32
SHANK3Q9BYB0 RPS15-207ENST00000591032 550 ntTSL 3 BASIC23.28■■□□□ 1.32
SHANK3Q9BYB0 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC23.28■■□□□ 1.32
SHANK3Q9BYB0 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
SHANK3Q9BYB0 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SHANK3Q9BYB0 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SHANK3Q9BYB0 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SHANK3Q9BYB0 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms