Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 POM121L3P-201ENST00000419331 1163 ntBASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 KRT16P4-201ENST00000453883 522 ntBASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 AC099336.1-202ENST00000602961 463 ntBASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRAIPQ9BWF2 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 KRT8P10-201ENST00000450021 1447 ntBASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRAIPQ9BWF2 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 AC091607.1-201ENST00000490318 1060 ntBASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAIPQ9BWF2 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 AL160237.2-201ENST00000556165 472 ntBASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 AC138894.3-201ENST00000603787 634 ntBASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAIPQ9BWF2 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms