Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
USP28Q96RU2 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 AL645608.8-201ENST00000606034 2086 ntBASIC20.73■□□□□ 0.91
USP28Q96RU2 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.73■□□□□ 0.91
USP28Q96RU2 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.73■□□□□ 0.91
USP28Q96RU2 DUTP2-201ENST00000519164 463 ntBASIC20.73■□□□□ 0.91
USP28Q96RU2 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.73■□□□□ 0.91
USP28Q96RU2 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
USP28Q96RU2 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
USP28Q96RU2 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
USP28Q96RU2 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.73■□□□□ 0.91
USP28Q96RU2 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.72■□□□□ 0.91
USP28Q96RU2 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP28Q96RU2 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP28Q96RU2 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP28Q96RU2 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.72■□□□□ 0.91
USP28Q96RU2 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.72■□□□□ 0.91
USP28Q96RU2 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP28Q96RU2 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP28Q96RU2 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP28Q96RU2 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.72■□□□□ 0.91
USP28Q96RU2 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.72■□□□□ 0.91
USP28Q96RU2 NEK4P2-201ENST00000580004 1012 ntBASIC20.72■□□□□ 0.91
USP28Q96RU2 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.72■□□□□ 0.91
USP28Q96RU2 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.72■□□□□ 0.91
USP28Q96RU2 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP28Q96RU2 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP28Q96RU2 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.72■□□□□ 0.91
USP28Q96RU2 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
USP28Q96RU2 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP28Q96RU2 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP28Q96RU2 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP28Q96RU2 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
USP28Q96RU2 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.71■□□□□ 0.91
USP28Q96RU2 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.71■□□□□ 0.91
USP28Q96RU2 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.71■□□□□ 0.91
USP28Q96RU2 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.71■□□□□ 0.91
USP28Q96RU2 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.71■□□□□ 0.91
USP28Q96RU2 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.71■□□□□ 0.91
USP28Q96RU2 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC20.71■□□□□ 0.91
USP28Q96RU2 AL157888.1-201ENST00000631930 593 ntBASIC20.71■□□□□ 0.91
USP28Q96RU2 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.71■□□□□ 0.91
USP28Q96RU2 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.71■□□□□ 0.91
USP28Q96RU2 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
USP28Q96RU2 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.71■□□□□ 0.91
USP28Q96RU2 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20.71■□□□□ 0.91
USP28Q96RU2 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP28Q96RU2 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.7■□□□□ 0.91
USP28Q96RU2 LINC00167-201ENST00000530583 1419 ntBASIC20.7■□□□□ 0.9
USP28Q96RU2 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.7■□□□□ 0.9
USP28Q96RU2 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP28Q96RU2 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP28Q96RU2 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.7■□□□□ 0.9
USP28Q96RU2 AC020916.1-201ENST00000587762 1774 ntBASIC20.7■□□□□ 0.9
USP28Q96RU2 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP28Q96RU2 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.7■□□□□ 0.9
USP28Q96RU2 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.7■□□□□ 0.9
USP28Q96RU2 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.7■□□□□ 0.9
USP28Q96RU2 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP28Q96RU2 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.7■□□□□ 0.9
USP28Q96RU2 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP28Q96RU2 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP28Q96RU2 ECEL1P3-201ENST00000427961 737 ntBASIC20.7■□□□□ 0.9
USP28Q96RU2 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP28Q96RU2 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.7■□□□□ 0.9
USP28Q96RU2 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
USP28Q96RU2 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP28Q96RU2 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP28Q96RU2 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP28Q96RU2 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
USP28Q96RU2 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP28Q96RU2 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms