Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 LINC01238-205ENST00000567549 1107 ntBASIC14.03□□□□□ -0.16
CCDC140Q96MF4 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 AC083849.1-201ENST00000615227 514 ntBASIC14.03□□□□□ -0.16
CCDC140Q96MF4 SPEG-225ENST00000617028 815 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 LINC01311-201ENST00000565162 1445 ntBASIC14.03□□□□□ -0.16
CCDC140Q96MF4 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 AC068880.1-201ENST00000507289 2297 ntBASIC14.03□□□□□ -0.16
CCDC140Q96MF4 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
CCDC140Q96MF4 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC140Q96MF4 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC140Q96MF4 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CCDC140Q96MF4 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC140Q96MF4 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC14.02□□□□□ -0.16
CCDC140Q96MF4 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC140Q96MF4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC140Q96MF4 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC14.02□□□□□ -0.16
CCDC140Q96MF4 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC140Q96MF4 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC140Q96MF4 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 KRT18P48-201ENST00000434763 852 ntBASIC14.02□□□□□ -0.17
CCDC140Q96MF4 SPDYE13P-201ENST00000445314 798 ntBASIC14.02□□□□□ -0.17
CCDC140Q96MF4 FAM210CP-201ENST00000445714 574 ntBASIC14.02□□□□□ -0.17
CCDC140Q96MF4 AL671277.2-201ENST00000458060 996 ntBASIC14.02□□□□□ -0.17
CCDC140Q96MF4 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CCDC140Q96MF4 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 MIR662-201ENST00000384847 95 ntBASIC14.01□□□□□ -0.17
CCDC140Q96MF4 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms