Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 TMEM161A-213ENST00000591443 657 ntTSL 224.42■■□□□ 1.58e-7■■□□□ 14.2
UPF1Q92900 TMEM161A-209ENST00000587985 1754 ntTSL 522.48■■□□□ 1.198e-7■■□□□ 14.2
UPF1Q92900 EHMT1-217ENST00000494249 2038 ntTSL 1 (best)22.46■■□□□ 1.198e-7■■□□□ 14.2
UPF1Q92900 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC22.02■■□□□ 1.128e-7■■□□□ 14.2
UPF1Q92900 EHMT1-246ENST00000637748 2006 ntTSL 522.02■■□□□ 1.128e-7■■□□□ 14.2
UPF1Q92900 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.043e-17■■□□□ 14.2
UPF1Q92900 TMEM161A-210ENST00000589448 1799 ntTSL 521.36■■□□□ 1.018e-7■■□□□ 14.2
UPF1Q92900 TMEM161A-205ENST00000587406 1923 ntTSL 520.76■□□□□ 0.918e-7■■□□□ 14.2
UPF1Q92900 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.868e-7■■□□□ 14.2
UPF1Q92900 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.27■□□□□ 0.848e-7■■□□□ 14.2
UPF1Q92900 NOP56-220ENST00000616692 2662 ntTSL 1 (best)19.96■□□□□ 0.798e-7■■□□□ 14.2
UPF1Q92900 NOP56-216ENST00000492135 1143 ntTSL 1 (best)19.74■□□□□ 0.758e-7■■□□□ 14.2
UPF1Q92900 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.688e-7■■□□□ 14.2
UPF1Q92900 TMED10-204ENST00000555873 1161 ntTSL 1 (best)17.97■□□□□ 0.478e-7■■□□□ 14.2
UPF1Q92900 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.458e-7■■□□□ 14.2
UPF1Q92900 TOMM40-204ENST00000589253 207 ntTSL 317.54■□□□□ 0.48e-7■■□□□ 14.2
UPF1Q92900 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.368e-7■■□□□ 14.2
UPF1Q92900 NOP56-206ENST00000466447 1094 ntTSL 217.23■□□□□ 0.358e-7■■□□□ 14.2
UPF1Q92900 EHMT1-208ENST00000475564 2782 ntTSL 1 (best)17.2■□□□□ 0.348e-7■■□□□ 14.2
UPF1Q92900 DAZAP2-215ENST00000604900 1045 ntTSL 3 BASIC15.85■□□□□ 0.133e-17■■□□□ 14.2
UPF1Q92900 NOP56-213ENST00000480992 929 ntTSL 515.73■□□□□ 0.118e-7■■□□□ 14.2
UPF1Q92900 DAZAP2-203ENST00000436900 1811 ntTSL 515.24■□□□□ 0.033e-17■■□□□ 14.2
UPF1Q92900 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.028e-7■■□□□ 14.2
UPF1Q92900 NOP56-202ENST00000415272 1628 ntTSL 514.95□□□□□ -0.028e-7■■□□□ 14.2
UPF1Q92900 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.036e-10■■□□□ 14.2
UPF1Q92900 DAZAP2-205ENST00000449723 2098 ntTSL 5 BASIC14.83□□□□□ -0.043e-17■■□□□ 14.2
UPF1Q92900 STIM1-218ENST00000533977 2080 ntTSL 1 (best) BASIC14.41□□□□□ -0.17e-9■■□□□ 14.2
UPF1Q92900 NOP56-219ENST00000612233 2980 nt14.29□□□□□ -0.128e-7■■□□□ 14.2
UPF1Q92900 SLC12A7-206ENST00000634447 3142 ntTSL 513.46□□□□□ -0.256e-10■■□□□ 14.2
UPF1Q92900 NOP56-207ENST00000467196 1320 ntTSL 513.08□□□□□ -0.328e-7■■□□□ 14.2
UPF1Q92900 TMED10-206ENST00000557670 917 ntTSL 212.92□□□□□ -0.348e-7■■□□□ 14.2
UPF1Q92900 NOP56-214ENST00000484998 998 ntTSL 512.89□□□□□ -0.358e-7■■□□□ 14.2
UPF1Q92900 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.46e-10■■□□□ 14.2
UPF1Q92900 SCO1-201ENST00000255390 9612 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.618e-7■■□□□ 14.2
UPF1Q92900 DAZAP2-214ENST00000552459 3664 ntTSL 210.91□□□□□ -0.663e-17■■□□□ 14.2
UPF1Q92900 SNORD86-201ENST00000391196 86 ntBASIC10.67□□□□□ -0.78e-7■■□□□ 14.2
UPF1Q92900 EHMT1-205ENST00000462942 7842 ntTSL 210.46□□□□□ -0.738e-7■■□□□ 14.2
UPF1Q92900 TMED10-202ENST00000555036 888 ntTSL 1 (best)9.73□□□□□ -0.858e-7■■□□□ 14.2
UPF1Q92900 DAZAP2-202ENST00000425012 1117 ntTSL 2 BASIC9.25□□□□□ -0.933e-17■■□□□ 14.2
UPF1Q92900 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.253e-7■■□□□ 14.2
UPF1Q92900 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC8□□□□□ -1.133e-6■■□□□ 14.2
UPF1Q92900 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.273e-6■■□□□ 14.2
UPF1Q92900 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.473e-6■■□□□ 14.2
UPF1Q92900 SEMA4G-204ENST00000484128 714 ntTSL 216.28■□□□□ 0.26e-7■■□□□ 14.2
UPF1Q92900 SEMA4G-212ENST00000613292 1171 ntTSL 1 (best) BASIC16.1■□□□□ 0.176e-7■■□□□ 14.2
UPF1Q92900 SEMA4G-205ENST00000517724 2675 ntTSL 1 (best) BASIC14.88□□□□□ -0.036e-7■■□□□ 14.2
UPF1Q92900 SEMA4G-211ENST00000521006 4656 ntTSL 1 (best)14.4□□□□□ -0.16e-7■■□□□ 14.2
UPF1Q92900 SEMA4G-201ENST00000210633 4094 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.776e-7■■□□□ 14.2
UPF1Q92900 AC120114.5-201ENST00000562285 556 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.212e-6■■□□□ 14.2
UPF1Q92900 CHMP1A-207ENST00000549328 1003 ntTSL 326.78■■□□□ 1.881e-9■■□□□ 14.2
UPF1Q92900 APLP2-207ENST00000525604 1590 ntTSL 218.3■□□□□ 0.525e-11■■□□□ 14.2
UPF1Q92900 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.353e-7■■□□□ 14.2
UPF1Q92900 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.233e-7■■□□□ 14.2
UPF1Q92900 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.143e-7■■□□□ 14.2
UPF1Q92900 RAD23A-208ENST00000591499 1350 ntTSL 229.96■■■□□ 2.394e-9■■□□□ 14.2
UPF1Q92900 RAD23A-202ENST00000586375 894 ntTSL 322.73■■□□□ 1.234e-9■■□□□ 14.2
UPF1Q92900 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC26.02■■□□□ 1.762e-6■■□□□ 14.2
UPF1Q92900 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.74e-7■■□□□ 14.2
UPF1Q92900 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC18.74■□□□□ 0.594e-7■■□□□ 14.2
UPF1Q92900 FP565260.6-202ENST00000625036 318 ntTSL 517.42■□□□□ 0.384e-7■■□□□ 14.2
UPF1Q92900 FP565260.6-201ENST00000624810 411 ntTSL 517.42■□□□□ 0.384e-7■■□□□ 14.2
UPF1Q92900 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.34e-7■■□□□ 14.2
UPF1Q92900 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC37.38■■■■□ 3.572e-7■■□□□ 14.2
UPF1Q92900 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC37.38■■■■□ 3.572e-7■■□□□ 14.2
UPF1Q92900 CD320-206ENST00000599573 861 ntTSL 224.74■■□□□ 1.552e-6■■□□□ 14.2
UPF1Q92900 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC9.56□□□□□ -0.882e-6■■□□□ 14.2
UPF1Q92900 CSDE1-207ENST00000483407 741 ntTSL 28.83□□□□□ -12e-6■■□□□ 14.2
UPF1Q92900 CSDE1-214ENST00000530886 3459 ntTSL 5 BASIC7.75□□□□□ -1.172e-6■■□□□ 14.2
UPF1Q92900 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC7.6□□□□□ -1.192e-6■■□□□ 14.2
UPF1Q92900 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC7.11□□□□□ -1.272e-6■■□□□ 14.2
UPF1Q92900 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC6.93□□□□□ -1.32e-6■■□□□ 14.2
UPF1Q92900 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.57□□□□□ -1.362e-6■■□□□ 14.2
UPF1Q92900 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.392e-6■■□□□ 14.2
UPF1Q92900 FKBP10-204ENST00000464180 1129 ntTSL 232.69■■■□□ 2.824e-8■■□□□ 14.2
UPF1Q92900 LOX-201ENST00000231004 5102 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.539e-8■■□□□ 14.2
UPF1Q92900 HK1-201ENST00000298649 3596 ntTSL 5 BASIC11.33□□□□□ -0.66e-8■■□□□ 14.1
UPF1Q92900 HK1-206ENST00000448642 3868 ntTSL 5 BASIC10.76□□□□□ -0.696e-8■■□□□ 14.1
UPF1Q92900 HK1-203ENST00000360289 3961 ntTSL 5 BASIC10.41□□□□□ -0.746e-8■■□□□ 14.1
UPF1Q92900 SERF2-217ENST00000630046 862 ntTSL 5 BASIC24.53■■□□□ 1.526e-17■■□□□ 14.1
UPF1Q92900 SERF2-206ENST00000409291 807 ntTSL 3 BASIC21.74■■□□□ 1.076e-17■■□□□ 14.1
UPF1Q92900 SERF2-208ENST00000409617 700 ntTSL 219.9■□□□□ 0.786e-17■■□□□ 14.1
UPF1Q92900 SERF2-211ENST00000430901 483 ntTSL 419.67■□□□□ 0.746e-17■■□□□ 14.1
UPF1Q92900 SERF2-209ENST00000409646 559 ntTSL 4 BASIC19.33■□□□□ 0.686e-17■■□□□ 14.1
UPF1Q92900 SERF2-212ENST00000445816 2099 ntTSL 316.54■□□□□ 0.246e-17■■□□□ 14.1
UPF1Q92900 SERF2-213ENST00000448830 2792 ntTSL 214.18□□□□□ -0.146e-17■■□□□ 14.1
UPF1Q92900 HK1-202ENST00000359426 3605 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.546e-8■■□□□ 14.1
UPF1Q92900 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.311e-6■■□□□ 14.1
UPF1Q92900 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.231e-6■■□□□ 14.1
UPF1Q92900 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.061e-6■■□□□ 14.1
UPF1Q92900 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.41■□□□□ 0.061e-6■■□□□ 14.1
UPF1Q92900 JRK-202ENST00000506774 561 ntTSL 311.57□□□□□ -0.561e-6■■□□□ 14.1
UPF1Q92900 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.621e-7■■□□□ 14.1
UPF1Q92900 BBS4-202ENST00000395205 2450 ntTSL 1 (best) BASIC12.04□□□□□ -0.482e-7■■□□□ 14.1
UPF1Q92900 BBS4-201ENST00000268057 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.632e-7■■□□□ 14.1
UPF1Q92900 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.452e-7■■□□□ 14.1
UPF1Q92900 AZIN1-202ENST00000347770 2857 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.022e-7■■□□□ 14.1
UPF1Q92900 AZIN1-208ENST00000521536 680 ntTSL 58.25□□□□□ -1.092e-7■■□□□ 14.1
UPF1Q92900 AZIN1-209ENST00000522311 872 ntTSL 37.32□□□□□ -1.242e-7■■□□□ 14.1
UPF1Q92900 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.281e-8■■□□□ 14.1
UPF1Q92900 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.341e-8■■□□□ 14.1
Retrieved 100 of 15,879 protein–RNA pairs in 91.9 ms