RNA–Protein interactions for RNA: ENST00000610726.4

CSDE1-218, Transcript of cold shock domain containing E1, humanhuman

TSL 5 BASIC

Gene CSDE1, Length 4,312 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-218ENST00000610726 NISCHQ9Y2I1 1504 aa13.48□□□□□ -0.25
CSDE1-218ENST00000610726 DCAF8L2P0C7V8 631 aa13.25□□□□□ -0.29
CSDE1-218ENST00000610726 SHROOM4Q9ULL8 1493 aa12.55□□□□□ -0.4
CSDE1-218ENST00000610726 SUPT5HO00267 1087 aaKnown RBP12.55□□□□□ -0.4
CSDE1-218ENST00000610726 EHMT2Q96KQ7 1210 aa11.99□□□□□ -0.49
CSDE1-218ENST00000610726 FAM9AQ8IZU1 332 aaPredicted RBP11.78□□□□□ -0.52
CSDE1-218ENST00000610726 TRIM41Q8WV44 630 aa11.61□□□□□ -0.55
CSDE1-218ENST00000610726 ABCC9O60706 1549 aa11.57□□□□□ -0.56
CSDE1-218ENST00000610726 TTBK1Q5TCY1 1321 aaPredicted RBP11.52□□□□□ -0.57
CSDE1-218ENST00000610726 RANGAP1P46060 587 aaPredicted RBP11.49□□□□□ -0.57
CSDE1-218ENST00000610726 APLP2Q06481 763 aa11.48□□□□□ -0.57
CSDE1-218ENST00000610726 PCGF6Q9BYE7 350 aa11.45□□□□□ -0.58
CSDE1-218ENST00000610726 PABPN1Q86U42 306 aaKnown RBP eCLIP11.41□□□□□ -0.58
CSDE1-218ENST00000610726 UBTFP17480 764 aaKnown RBP11.37□□□□□ -0.59
CSDE1-218ENST00000610726 CHIC1Q5VXU3 224 aa11.35□□□□□ -0.59
CSDE1-218ENST00000610726 LOC105371045A0A1W2PR82 267 aa11.28□□□□□ -0.6
CSDE1-218ENST00000610726 ATP1B4Q9UN42 357 aaPredicted RBP11.27□□□□□ -0.6
CSDE1-218ENST00000610726 PPARGC1BQ86YN6 1023 aaKnown RBP11.26□□□□□ -0.61
CSDE1-218ENST00000610726 ZCCHC6Q5VYS8 1495 aaKnown RBP11.18□□□□□ -0.62
CSDE1-218ENST00000610726 CCER1Q8TC90 406 aaPredicted RBP11.12□□□□□ -0.63
CSDE1-218ENST00000610726 CCDC180Q9P1Z9 1646 aa11.09□□□□□ -0.63
CSDE1-218ENST00000610726 SCRIBQ14160 1630 aa11.06□□□□□ -0.64
CSDE1-218ENST00000610726 TRIM26Q12899 539 aaPredicted RBP11.02□□□□□ -0.65
CSDE1-218ENST00000610726 ZEB1P37275 1124 aaPredicted RBP10.98□□□□□ -0.65
CSDE1-218ENST00000610726 ITGAEP38570 1179 aa10.96□□□□□ -0.65
CSDE1-218ENST00000610726 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.93□□□□□ -0.66
CSDE1-218ENST00000610726 HNRNPUL2Q1KMD3 747 aaKnown RBP10.93□□□□□ -0.66
CSDE1-218ENST00000610726 HRCP23327 699 aa10.83□□□□□ -0.68
CSDE1-218ENST00000610726 CSRNP3Q8WYN3 585 aa10.8□□□□□ -0.68
CSDE1-218ENST00000610726 RB1CC1Q8TDY2 1594 aa10.8□□□□□ -0.68
CSDE1-218ENST00000610726 RSF1Q96T23 1441 aaPredicted RBP10.76□□□□□ -0.69
CSDE1-218ENST00000610726 FBLN2P98095 1184 aa10.76□□□□□ -0.69
CSDE1-218ENST00000610726 NACADO15069 1562 aa10.75□□□□□ -0.69
CSDE1-218ENST00000610726 MYT1LQ9UL68 1186 aa10.73□□□□□ -0.69
CSDE1-218ENST00000610726 P3H3Q8IVL6 736 aa10.72□□□□□ -0.69
CSDE1-218ENST00000610726 FAM50AQ14320 339 aaKnown RBP10.71□□□□□ -0.69
CSDE1-218ENST00000610726 YTHDC1Q96MU7 727 aaKnown RBP10.71□□□□□ -0.7
CSDE1-218ENST00000610726 CENPBP07199 599 aaPredicted RBP10.7□□□□□ -0.7
CSDE1-218ENST00000610726 DCAF1Q9Y4B6 1507 aa10.67□□□□□ -0.7
CSDE1-218ENST00000610726 PELP1Q8IZL8 1130 aaKnown RBP10.67□□□□□ -0.7
CSDE1-218ENST00000610726 CECR2Q9BXF3 1484 aa10.66□□□□□ -0.7
CSDE1-218ENST00000610726 ARID3CA6NKF2 412 aa10.65□□□□□ -0.7
CSDE1-218ENST00000610726 POLR3GLQ9BT43 218 aa10.6□□□□□ -0.71
CSDE1-218ENST00000610726 TRIM52Q96A61 297 aa10.56□□□□□ -0.72
CSDE1-218ENST00000610726 MYO15BQ96JP2 1530 aa10.56□□□□□ -0.72
CSDE1-218ENST00000610726 CNGB1Q14028 1251 aaPredicted RBP10.56□□□□□ -0.72
CSDE1-218ENST00000610726 NEUROD1Q13562 356 aa10.55□□□□□ -0.72
CSDE1-218ENST00000610726 BAZ1BQ9UIG0 1483 aaKnown RBP10.54□□□□□ -0.72
CSDE1-218ENST00000610726 BAZ1AQ9NRL2 1556 aaPredicted RBP10.52□□□□□ -0.73
CSDE1-218ENST00000610726 MROH2BQ7Z745 1585 aa10.49□□□□□ -0.73
CSDE1-218ENST00000610726 WRNQ14191 1432 aaPredicted RBP eCLIP10.48□□□□□ -0.732e-7■□□□□ 9.9
CSDE1-218ENST00000610726 DIEXFQ68CQ4 756 aaKnown RBP10.48□□□□□ -0.73
CSDE1-218ENST00000610726 ZNF777Q9ULD5 760 aaPredicted RBP10.46□□□□□ -0.74
CSDE1-218ENST00000610726 NEFLP07196 543 aa10.44□□□□□ -0.74
CSDE1-218ENST00000610726 ZNF326Q5BKZ1 582 aaKnown RBP10.42□□□□□ -0.74
CSDE1-218ENST00000610726 CLIP1P30622 1438 aa10.41□□□□□ -0.74
CSDE1-218ENST00000610726 CDK11AQ9UQ88 783 aaPredicted RBP10.41□□□□□ -0.74
CSDE1-218ENST00000610726 CHMP7Q8WUX9 453 aaPredicted RBP10.39□□□□□ -0.75
CSDE1-218ENST00000610726 CCDC88BA6NC98 1476 aa10.37□□□□□ -0.75
CSDE1-218ENST00000610726 EEA1Q15075 1411 aa10.37□□□□□ -0.75
CSDE1-218ENST00000610726 CEP162Q5TB80 1403 aa10.36□□□□□ -0.75
CSDE1-218ENST00000610726 SLC4A1APQ9BWU0 796 aaKnown RBP10.35□□□□□ -0.75
CSDE1-218ENST00000610726 SOGA1O94964 1423 aa10.35□□□□□ -0.75
CSDE1-218ENST00000610726 CHIC2Q9UKJ5 165 aa10.34□□□□□ -0.75
CSDE1-218ENST00000610726 GOLGA3Q08378 1498 aa10.34□□□□□ -0.75
CSDE1-218ENST00000610726 KIF27Q86VH2 1401 aa10.34□□□□□ -0.75
CSDE1-218ENST00000610726 ZNF316A6NFI3 1004 aaPredicted RBP10.32□□□□□ -0.76
CSDE1-218ENST00000610726 WIZO95785 1651 aa10.32□□□□□ -0.76
CSDE1-218ENST00000610726 MTUS2Q5JR59 1369 aa10.31□□□□□ -0.76
CSDE1-218ENST00000610726 ABCC8Q09428 1581 aa10.3□□□□□ -0.76
CSDE1-218ENST00000610726 TNIKQ9UKE5 1360 aa10.3□□□□□ -0.76
CSDE1-218ENST00000610726 CEP164Q9UPV0 1460 aa10.28□□□□□ -0.76
CSDE1-218ENST00000610726 SMARCA2P51531 1590 aa10.26□□□□□ -0.77
CSDE1-218ENST00000610726 NPM1P06748 294 aaKnown RBP eCLIP10.25□□□□□ -0.77
CSDE1-218ENST00000610726 CUX2O14529 1486 aa10.25□□□□□ -0.77
CSDE1-218ENST00000610726 ERCC6Q03468 1493 aa10.24□□□□□ -0.77
CSDE1-218ENST00000610726 ATAD2BQ9ULI0 1458 aa10.24□□□□□ -0.77
CSDE1-218ENST00000610726 ERICH6Q7L0X2 663 aa10.23□□□□□ -0.77
CSDE1-218ENST00000610726 ANP32CO43423 234 aa10.23□□□□□ -0.77
CSDE1-218ENST00000610726 CARMIL1Q5VZK9 1371 aa10.22□□□□□ -0.77
CSDE1-218ENST00000610726 TOP2AP11388 1531 aaKnown RBP10.22□□□□□ -0.77
CSDE1-218ENST00000610726 KCNH8Q96L42 1107 aa10.21□□□□□ -0.77
CSDE1-218ENST00000610726 RRP7BPQ9NSQ0 103 aa10.21□□□□□ -0.77
CSDE1-218ENST00000610726 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.21□□□□□ -0.781e-10■■□□□ 13.5
CSDE1-218ENST00000610726 TONSLQ96HA7 1378 aa10.21□□□□□ -0.78
CSDE1-218ENST00000610726 TSPY4P0CV99 314 aa10.21□□□□□ -0.78
CSDE1-218ENST00000610726 TSPY10P0CW01 314 aa10.21□□□□□ -0.78
CSDE1-218ENST00000610726 SMARCA4P51532 1647 aa10.19□□□□□ -0.78
CSDE1-218ENST00000610726 TDRD9Q8NDG6 1382 aaKnown RBP10.19□□□□□ -0.78
CSDE1-218ENST00000610726 PLEKHD1A6NEE1 506 aa10.18□□□□□ -0.78
CSDE1-218ENST00000610726 CADPSQ9ULU8 1353 aa10.17□□□□□ -0.78
CSDE1-218ENST00000610726 CHGAP10645 457 aaKnown RBP10.16□□□□□ -0.78
CSDE1-218ENST00000610726 DDX10Q13206 875 aaKnown RBP10.15□□□□□ -0.78
CSDE1-218ENST00000610726 HIRIP3Q9BW71 556 aaPredicted RBP10.14□□□□□ -0.79
CSDE1-218ENST00000610726 PDS5BQ9NTI5 1447 aa10.14□□□□□ -0.79
CSDE1-218ENST00000610726 BCANQ96GW7 911 aa10.14□□□□□ -0.79
CSDE1-218ENST00000610726 CFDP1Q9UEE9 299 aaPredicted RBP10.12□□□□□ -0.79
CSDE1-218ENST00000610726 GTF3C3Q9Y5Q9 886 aa10.12□□□□□ -0.79
CSDE1-218ENST00000610726 PLPPR3Q6T4P5 718 aa10.12□□□□□ -0.79
CSDE1-218ENST00000610726 KDM2AQ9Y2K7 1162 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms