Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 KRT18P55-202ENST00000578578 1546 ntBASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 SNORA78-201ENST00000459373 127 ntBASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 AC116562.4-202ENST00000641738 218 ntBASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
ATG4AQ8WYN0 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 AC080080.1-201ENST00000625121 2420 ntBASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATG4AQ8WYN0 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 KRT8P9-201ENST00000558927 1449 ntBASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 MIR718-201ENST00000390190 70 ntBASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 TSPY15P-201ENST00000457163 923 ntBASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 AC010240.3-201ENST00000607688 395 ntBASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 AC100803.2-201ENST00000562459 1963 ntBASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 AC132938.6-201ENST00000623828 1655 ntBASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 AC141586.5-201ENST00000624546 2050 ntBASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 AC108860.2-201ENST00000562760 2183 ntBASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 BCL2-203ENST00000589955 5011 ntBASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.78■□□□□ 0.6
ATG4AQ8WYN0 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATG4AQ8WYN0 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATG4AQ8WYN0 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATG4AQ8WYN0 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATG4AQ8WYN0 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.77■□□□□ 0.6
ATG4AQ8WYN0 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATG4AQ8WYN0 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.77■□□□□ 0.6
ATG4AQ8WYN0 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.77■□□□□ 0.6
ATG4AQ8WYN0 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.77■□□□□ 0.6
ATG4AQ8WYN0 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ATG4AQ8WYN0 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.77■□□□□ 0.6
ATG4AQ8WYN0 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.77■□□□□ 0.6
ATG4AQ8WYN0 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
ATG4AQ8WYN0 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ATG4AQ8WYN0 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
ATG4AQ8WYN0 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms