Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCNA1P78396 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CCNA1P78396 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCNA1P78396 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CCNA1P78396 LAGE3P1-201ENST00000425356 484 ntBASIC20.56■□□□□ 0.88
CCNA1P78396 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC20.56■□□□□ 0.88
CCNA1P78396 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC20.56■□□□□ 0.88
CCNA1P78396 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC20.56■□□□□ 0.88
CCNA1P78396 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.56■□□□□ 0.88
CCNA1P78396 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.56■□□□□ 0.88
CCNA1P78396 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC20.56■□□□□ 0.88
CCNA1P78396 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CCNA1P78396 AP000867.4-201ENST00000641616 219 ntBASIC20.56■□□□□ 0.88
CCNA1P78396 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCNA1P78396 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CCNA1P78396 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCNA1P78396 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.56■□□□□ 0.88
CCNA1P78396 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CCNA1P78396 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCNA1P78396 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCNA1P78396 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.56■□□□□ 0.88
CCNA1P78396 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCNA1P78396 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCNA1P78396 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCNA1P78396 AC005332.7-201ENST00000614046 2005 ntBASIC20.55■□□□□ 0.88
CCNA1P78396 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.55■□□□□ 0.88
CCNA1P78396 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCNA1P78396 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCNA1P78396 UPF3AP3-201ENST00000420996 769 ntBASIC20.55■□□□□ 0.88
CCNA1P78396 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCNA1P78396 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
CCNA1P78396 AL691403.2-201ENST00000618460 490 ntBASIC20.55■□□□□ 0.88
CCNA1P78396 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCNA1P78396 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCNA1P78396 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.55■□□□□ 0.88
CCNA1P78396 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCNA1P78396 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCNA1P78396 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCNA1P78396 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.54■□□□□ 0.88
CCNA1P78396 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.54■□□□□ 0.88
CCNA1P78396 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.54■□□□□ 0.88
CCNA1P78396 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCNA1P78396 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCNA1P78396 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.54■□□□□ 0.88
CCNA1P78396 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
CCNA1P78396 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.54■□□□□ 0.88
CCNA1P78396 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCNA1P78396 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CCNA1P78396 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCNA1P78396 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCNA1P78396 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.54■□□□□ 0.88
CCNA1P78396 NMU-202ENST00000505262 693 ntTSL 3 BASIC20.54■□□□□ 0.88
CCNA1P78396 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.54■□□□□ 0.88
CCNA1P78396 AC040169.1-201ENST00000565382 521 ntBASIC20.54■□□□□ 0.88
CCNA1P78396 RNF151-202ENST00000569210 853 ntTSL 2 BASIC20.54■□□□□ 0.88
CCNA1P78396 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.54■□□□□ 0.88
CCNA1P78396 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC20.54■□□□□ 0.88
CCNA1P78396 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCNA1P78396 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCNA1P78396 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
CCNA1P78396 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCNA1P78396 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCNA1P78396 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCNA1P78396 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CCNA1P78396 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCNA1P78396 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
CCNA1P78396 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCNA1P78396 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCNA1P78396 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCNA1P78396 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCNA1P78396 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCNA1P78396 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCNA1P78396 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCNA1P78396 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CCNA1P78396 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CCNA1P78396 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCNA1P78396 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCNA1P78396 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC20.53■□□□□ 0.88
CCNA1P78396 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.53■□□□□ 0.88
CCNA1P78396 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC20.53■□□□□ 0.88
CCNA1P78396 DNAJB3-201ENST00000446806 729 ntBASIC20.53■□□□□ 0.88
CCNA1P78396 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.53■□□□□ 0.88
CCNA1P78396 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CCNA1P78396 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCNA1P78396 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
CCNA1P78396 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCNA1P78396 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCNA1P78396 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
CCNA1P78396 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.53■□□□□ 0.88
CCNA1P78396 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCNA1P78396 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.53■□□□□ 0.88
CCNA1P78396 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.53■□□□□ 0.88
CCNA1P78396 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCNA1P78396 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCNA1P78396 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCNA1P78396 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCNA1P78396 GMCL1P1-201ENST00000463439 1581 ntBASIC20.52■□□□□ 0.88
CCNA1P78396 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.52■□□□□ 0.88
CCNA1P78396 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
CCNA1P78396 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms