Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CKS1BP61024 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CKS1BP61024 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CKS1BP61024 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CKS1BP61024 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CKS1BP61024 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CKS1BP61024 ME3-201ENST00000323418 1068 ntTSL 5 BASIC12.71□□□□□ -0.37
CKS1BP61024 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC12.71□□□□□ -0.37
CKS1BP61024 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC12.71□□□□□ -0.37
CKS1BP61024 TUBB8P6-201ENST00000436895 1288 ntBASIC12.71□□□□□ -0.37
CKS1BP61024 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC12.71□□□□□ -0.37
CKS1BP61024 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC12.71□□□□□ -0.37
CKS1BP61024 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CKS1BP61024 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CKS1BP61024 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CKS1BP61024 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CKS1BP61024 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CKS1BP61024 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CKS1BP61024 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC12.71□□□□□ -0.37
CKS1BP61024 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CKS1BP61024 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CKS1BP61024 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
CKS1BP61024 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CKS1BP61024 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CKS1BP61024 MYB-201ENST00000316528 3571 ntTSL 5 BASIC12.71□□□□□ -0.38
CKS1BP61024 MYB-241ENST00000616088 3573 ntTSL 5 BASIC12.71□□□□□ -0.38
CKS1BP61024 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC12.71□□□□□ -0.38
CKS1BP61024 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
CKS1BP61024 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CKS1BP61024 CES3-203ENST00000543856 3178 ntTSL 2 BASIC12.71□□□□□ -0.38
CKS1BP61024 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CKS1BP61024 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC12.7□□□□□ -0.38
CKS1BP61024 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
CKS1BP61024 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC12.7□□□□□ -0.38
CKS1BP61024 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC12.7□□□□□ -0.38
CKS1BP61024 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 BANP-201ENST00000286122 2368 ntTSL 5 BASIC12.7□□□□□ -0.38
CKS1BP61024 AC124283.5-201ENST00000624661 1809 ntBASIC12.7□□□□□ -0.38
CKS1BP61024 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC12.7□□□□□ -0.38
CKS1BP61024 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CKS1BP61024 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC12.7□□□□□ -0.38
CKS1BP61024 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC12.7□□□□□ -0.38
CKS1BP61024 OR2A1-AS1-201ENST00000462305 773 ntBASIC12.7□□□□□ -0.38
CKS1BP61024 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC12.7□□□□□ -0.38
CKS1BP61024 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC12.7□□□□□ -0.38
CKS1BP61024 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC12.7□□□□□ -0.38
CKS1BP61024 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC12.7□□□□□ -0.38
CKS1BP61024 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CKS1BP61024 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CKS1BP61024 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC12.7□□□□□ -0.38
CKS1BP61024 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CKS1BP61024 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CKS1BP61024 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CKS1BP61024 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC12.69□□□□□ -0.38
CKS1BP61024 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC12.69□□□□□ -0.38
CKS1BP61024 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC12.69□□□□□ -0.38
CKS1BP61024 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CKS1BP61024 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CKS1BP61024 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms