Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
MSH6P52701 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
MSH6P52701 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
MSH6P52701 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC24.97■■□□□ 1.59
MSH6P52701 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
MSH6P52701 GOLGA6L17P-202ENST00000614358 1398 ntBASIC24.97■■□□□ 1.59
MSH6P52701 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
MSH6P52701 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC24.97■■□□□ 1.59
MSH6P52701 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
MSH6P52701 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
MSH6P52701 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
MSH6P52701 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
MSH6P52701 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC24.96■■□□□ 1.59
MSH6P52701 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC24.96■■□□□ 1.59
MSH6P52701 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
MSH6P52701 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
MSH6P52701 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
MSH6P52701 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
MSH6P52701 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
MSH6P52701 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC24.96■■□□□ 1.59
MSH6P52701 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
MSH6P52701 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC24.96■■□□□ 1.59
MSH6P52701 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC24.96■■□□□ 1.59
MSH6P52701 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
MSH6P52701 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC24.96■■□□□ 1.59
MSH6P52701 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
MSH6P52701 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC24.96■■□□□ 1.59
MSH6P52701 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
MSH6P52701 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
MSH6P52701 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC24.95■■□□□ 1.59
MSH6P52701 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
MSH6P52701 STOM-202ENST00000347359 870 ntTSL 2 BASIC24.95■■□□□ 1.59
MSH6P52701 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
MSH6P52701 SPDYE21P-201ENST00000413323 827 ntBASIC24.95■■□□□ 1.59
MSH6P52701 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
MSH6P52701 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC24.95■■□□□ 1.59
MSH6P52701 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC24.95■■□□□ 1.59
MSH6P52701 MIR4745-201ENST00000577608 62 ntBASIC24.95■■□□□ 1.59
MSH6P52701 AC099343.3-201ENST00000605834 2503 ntBASIC24.95■■□□□ 1.58
MSH6P52701 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
MSH6P52701 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
MSH6P52701 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC24.95■■□□□ 1.58
MSH6P52701 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC24.95■■□□□ 1.58
MSH6P52701 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC24.95■■□□□ 1.58
MSH6P52701 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC24.95■■□□□ 1.58
MSH6P52701 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
MSH6P52701 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC24.94■■□□□ 1.58
MSH6P52701 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
MSH6P52701 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC24.94■■□□□ 1.58
MSH6P52701 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
MSH6P52701 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC24.94■■□□□ 1.58
MSH6P52701 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC24.94■■□□□ 1.58
MSH6P52701 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC24.94■■□□□ 1.58
MSH6P52701 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
MSH6P52701 AC005498.2-205ENST00000593218 784 ntBASIC24.94■■□□□ 1.58
MSH6P52701 AC004706.3-202ENST00000621574 984 ntBASIC24.94■■□□□ 1.58
MSH6P52701 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC24.94■■□□□ 1.58
MSH6P52701 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
MSH6P52701 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC24.94■■□□□ 1.58
MSH6P52701 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
MSH6P52701 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
MSH6P52701 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
MSH6P52701 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC24.94■■□□□ 1.58
MSH6P52701 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
MSH6P52701 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC24.94■■□□□ 1.58
MSH6P52701 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
MSH6P52701 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
MSH6P52701 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
MSH6P52701 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC24.93■■□□□ 1.58
MSH6P52701 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC24.93■■□□□ 1.58
MSH6P52701 AC190387.1-201ENST00000551683 408 ntBASIC24.93■■□□□ 1.58
MSH6P52701 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC24.93■■□□□ 1.58
MSH6P52701 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC24.93■■□□□ 1.58
MSH6P52701 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
MSH6P52701 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
MSH6P52701 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC24.93■■□□□ 1.58
MSH6P52701 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC24.93■■□□□ 1.58
MSH6P52701 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
MSH6P52701 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC24.93■■□□□ 1.58
MSH6P52701 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC24.93■■□□□ 1.58
MSH6P52701 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
MSH6P52701 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
MSH6P52701 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
MSH6P52701 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
MSH6P52701 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
MSH6P52701 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
MSH6P52701 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC24.93■■□□□ 1.58
MSH6P52701 RBM7-207ENST00000544582 692 ntTSL 3 BASIC24.93■■□□□ 1.58
MSH6P52701 AC004449.1-201ENST00000564240 433 ntBASIC24.93■■□□□ 1.58
MSH6P52701 AD001527.2-201ENST00000622994 785 ntBASIC24.93■■□□□ 1.58
MSH6P52701 AL035252.4-201ENST00000624174 288 ntBASIC24.93■■□□□ 1.58
MSH6P52701 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC24.92■■□□□ 1.58
MSH6P52701 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC24.92■■□□□ 1.58
MSH6P52701 AFG3L1P-217ENST00000557444 2447 ntBASIC24.92■■□□□ 1.58
MSH6P52701 AC006504.4-201ENST00000592118 1568 ntBASIC24.92■■□□□ 1.58
MSH6P52701 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC24.92■■□□□ 1.58
MSH6P52701 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC24.92■■□□□ 1.58
MSH6P52701 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
MSH6P52701 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC24.92■■□□□ 1.58
MSH6P52701 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms