Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
COL6A2P12110 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
COL6A2P12110 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.91■□□□□ 0.46
COL6A2P12110 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 C2orf69P3-201ENST00000565542 1120 ntBASIC17.91■□□□□ 0.46
COL6A2P12110 MIR4785-201ENST00000585005 73 ntBASIC17.91■□□□□ 0.46
COL6A2P12110 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.91■□□□□ 0.46
COL6A2P12110 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.91■□□□□ 0.46
COL6A2P12110 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
COL6A2P12110 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.91■□□□□ 0.46
COL6A2P12110 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
COL6A2P12110 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.91■□□□□ 0.46
COL6A2P12110 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
COL6A2P12110 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
COL6A2P12110 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
COL6A2P12110 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.91■□□□□ 0.46
COL6A2P12110 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
COL6A2P12110 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A2P12110 AL645608.8-201ENST00000606034 2086 ntBASIC17.91■□□□□ 0.46
COL6A2P12110 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.9■□□□□ 0.46
COL6A2P12110 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
COL6A2P12110 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
COL6A2P12110 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
COL6A2P12110 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
COL6A2P12110 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.9■□□□□ 0.46
COL6A2P12110 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
COL6A2P12110 MIR718-201ENST00000390190 70 ntBASIC17.9■□□□□ 0.46
COL6A2P12110 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.9■□□□□ 0.46
COL6A2P12110 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.9■□□□□ 0.46
COL6A2P12110 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
COL6A2P12110 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.9■□□□□ 0.46
COL6A2P12110 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.9■□□□□ 0.46
COL6A2P12110 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.9■□□□□ 0.46
COL6A2P12110 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.9■□□□□ 0.46
COL6A2P12110 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
COL6A2P12110 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.9■□□□□ 0.46
COL6A2P12110 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.9■□□□□ 0.46
COL6A2P12110 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
COL6A2P12110 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 PRORSD1P-202ENST00000563365 2154 ntBASIC17.9■□□□□ 0.46
COL6A2P12110 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.9■□□□□ 0.46
COL6A2P12110 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
COL6A2P12110 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.9■□□□□ 0.46
COL6A2P12110 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A2P12110 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL6A2P12110 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.89■□□□□ 0.46
COL6A2P12110 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.89■□□□□ 0.45
COL6A2P12110 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A2P12110 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.89■□□□□ 0.45
COL6A2P12110 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.89■□□□□ 0.45
COL6A2P12110 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
COL6A2P12110 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
COL6A2P12110 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A2P12110 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
COL6A2P12110 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.89■□□□□ 0.45
COL6A2P12110 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A2P12110 TSPY14P-201ENST00000303979 915 ntBASIC17.89■□□□□ 0.45
COL6A2P12110 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A2P12110 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A2P12110 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A2P12110 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A2P12110 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
COL6A2P12110 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.89■□□□□ 0.45
COL6A2P12110 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.89■□□□□ 0.45
COL6A2P12110 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.89■□□□□ 0.45
COL6A2P12110 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.89■□□□□ 0.45
COL6A2P12110 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms