Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.23■□□□□ 0.51
VIMP08670 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
VIMP08670 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VIMP08670 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC18.23■□□□□ 0.51
VIMP08670 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VIMP08670 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.23■□□□□ 0.51
VIMP08670 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
VIMP08670 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC18.23■□□□□ 0.51
VIMP08670 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VIMP08670 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.23■□□□□ 0.51
VIMP08670 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.23■□□□□ 0.51
VIMP08670 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VIMP08670 HTR7P1-201ENST00000538670 1336 ntBASIC18.23■□□□□ 0.51
VIMP08670 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VIMP08670 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.23■□□□□ 0.51
VIMP08670 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
VIMP08670 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.22■□□□□ 0.51
VIMP08670 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.22■□□□□ 0.51
VIMP08670 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.22■□□□□ 0.51
VIMP08670 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.22■□□□□ 0.51
VIMP08670 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
VIMP08670 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC18.22■□□□□ 0.51
VIMP08670 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
VIMP08670 AC006015.1-201ENST00000429970 570 ntBASIC18.22■□□□□ 0.51
VIMP08670 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.22■□□□□ 0.51
VIMP08670 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 RARRES2P6-201ENST00000567333 442 ntBASIC18.22■□□□□ 0.51
VIMP08670 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.22■□□□□ 0.51
VIMP08670 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.22■□□□□ 0.51
VIMP08670 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.22■□□□□ 0.51
VIMP08670 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.22■□□□□ 0.51
VIMP08670 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.22■□□□□ 0.51
VIMP08670 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
VIMP08670 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
VIMP08670 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
VIMP08670 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
VIMP08670 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
VIMP08670 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
VIMP08670 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VIMP08670 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VIMP08670 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
VIMP08670 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
VIMP08670 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.21■□□□□ 0.51
VIMP08670 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VIMP08670 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
VIMP08670 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VIMP08670 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.21■□□□□ 0.51
VIMP08670 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VIMP08670 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VIMP08670 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.21■□□□□ 0.51
VIMP08670 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.21■□□□□ 0.51
VIMP08670 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VIMP08670 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.21■□□□□ 0.51
VIMP08670 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.21■□□□□ 0.51
VIMP08670 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.21■□□□□ 0.51
VIMP08670 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.21■□□□□ 0.51
VIMP08670 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.21■□□□□ 0.51
VIMP08670 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.21■□□□□ 0.51
VIMP08670 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VIMP08670 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VIMP08670 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VIMP08670 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
VIMP08670 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VIMP08670 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VIMP08670 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VIMP08670 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VIMP08670 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
VIMP08670 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
VIMP08670 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
VIMP08670 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.5
VIMP08670 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VIMP08670 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
VIMP08670 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.2■□□□□ 0.5
VIMP08670 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 CICP6-201ENST00000457191 2729 ntBASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms