Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM13O60858 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM13O60858 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 AC009053.2-201ENST00000563701 2365 ntBASIC17.86■□□□□ 0.45
TRIM13O60858 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.86■□□□□ 0.45
TRIM13O60858 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM13O60858 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.86■□□□□ 0.45
TRIM13O60858 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM13O60858 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.86■□□□□ 0.45
TRIM13O60858 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.86■□□□□ 0.45
TRIM13O60858 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.86■□□□□ 0.45
TRIM13O60858 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.86■□□□□ 0.45
TRIM13O60858 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
TRIM13O60858 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM13O60858 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM13O60858 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM13O60858 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM13O60858 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
TRIM13O60858 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM13O60858 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM13O60858 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM13O60858 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
TRIM13O60858 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
TRIM13O60858 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM13O60858 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM13O60858 CRYGFP-201ENST00000418459 633 ntBASIC17.85■□□□□ 0.45
TRIM13O60858 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TRIM13O60858 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.85■□□□□ 0.45
TRIM13O60858 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.85■□□□□ 0.45
TRIM13O60858 AC009065.1-201ENST00000564055 1225 ntBASIC17.85■□□□□ 0.45
TRIM13O60858 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
TRIM13O60858 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TRIM13O60858 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.85■□□□□ 0.45
TRIM13O60858 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM13O60858 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM13O60858 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM13O60858 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM13O60858 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM13O60858 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
TRIM13O60858 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
TRIM13O60858 CD99P1-205ENST00000527459 561 ntBASIC17.84■□□□□ 0.45
TRIM13O60858 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.84■□□□□ 0.45
TRIM13O60858 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.84■□□□□ 0.45
TRIM13O60858 MIR4651-201ENST00000582622 73 ntBASIC17.84■□□□□ 0.45
TRIM13O60858 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM13O60858 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.84■□□□□ 0.45
TRIM13O60858 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
TRIM13O60858 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
TRIM13O60858 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.84■□□□□ 0.45
TRIM13O60858 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM13O60858 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM13O60858 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
TRIM13O60858 AC080080.1-201ENST00000625121 2420 ntBASIC17.83■□□□□ 0.45
TRIM13O60858 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM13O60858 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.83■□□□□ 0.45
TRIM13O60858 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM13O60858 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM13O60858 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM13O60858 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM13O60858 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
TRIM13O60858 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
TRIM13O60858 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms