Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HIF3AQ9Y2N7 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.42■□□□□ 0.22
HIF3AQ9Y2N7 AP000997.3-201ENST00000623333 2250 ntBASIC16.42■□□□□ 0.22
HIF3AQ9Y2N7 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HIF3AQ9Y2N7 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.42■□□□□ 0.22
HIF3AQ9Y2N7 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HIF3AQ9Y2N7 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 AC134043.2-201ENST00000624206 2238 ntBASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 SEC1P-202ENST00000473944 940 ntBASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 FAM87A-204ENST00000613235 858 ntBASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HIF3AQ9Y2N7 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 HMGA1P5-201ENST00000412453 271 ntBASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 AC009947.2-201ENST00000444014 672 ntBASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 NEK4P2-201ENST00000580004 1012 ntBASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIF3AQ9Y2N7 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.39■□□□□ 0.21
HIF3AQ9Y2N7 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms