Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
LRFN3Q9BTN0 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LRFN3Q9BTN0 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
LRFN3Q9BTN0 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.01■□□□□ 0.47
LRFN3Q9BTN0 KRT8P47-201ENST00000604727 1398 ntBASIC18.01■□□□□ 0.47
LRFN3Q9BTN0 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRFN3Q9BTN0 AC233723.2-201ENST00000623798 2106 ntBASIC18.01■□□□□ 0.47
LRFN3Q9BTN0 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRFN3Q9BTN0 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
LRFN3Q9BTN0 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LRFN3Q9BTN0 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 CU639417.3-201ENST00000624240 1404 ntBASIC18■□□□□ 0.47
LRFN3Q9BTN0 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LRFN3Q9BTN0 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18■□□□□ 0.47
LRFN3Q9BTN0 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18■□□□□ 0.47
LRFN3Q9BTN0 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
LRFN3Q9BTN0 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC18■□□□□ 0.47
LRFN3Q9BTN0 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC18■□□□□ 0.47
LRFN3Q9BTN0 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
LRFN3Q9BTN0 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18■□□□□ 0.47
LRFN3Q9BTN0 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LRFN3Q9BTN0 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 AL163051.1-201ENST00000569214 1512 ntBASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 IGHV3-42-201ENST00000520410 361 ntBASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 AL512356.2-201ENST00000546955 174 ntBASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 AC068137.2-201ENST00000605408 478 ntBASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
LRFN3Q9BTN0 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 TREML5P-201ENST00000421694 576 ntBASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 TIMM8BP1-201ENST00000452384 211 ntBASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 SERBP1P5-201ENST00000510079 1181 ntBASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
LRFN3Q9BTN0 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LRFN3Q9BTN0 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
LRFN3Q9BTN0 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LRFN3Q9BTN0 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LRFN3Q9BTN0 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
LRFN3Q9BTN0 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
LRFN3Q9BTN0 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.97■□□□□ 0.47
LRFN3Q9BTN0 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LRFN3Q9BTN0 FBXW4P1-201ENST00000426721 2239 ntBASIC17.97■□□□□ 0.47
LRFN3Q9BTN0 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms