Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 AC022188.1-201ENST00000620960 1664 ntBASIC12.67□□□□□ -0.38
VPS25Q9BRG1 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 SNX18-202ENST00000343017 3140 ntBASIC12.66□□□□□ -0.38
VPS25Q9BRG1 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 PCDHA3-202ENST00000532566 4594 ntBASIC12.66□□□□□ -0.38
VPS25Q9BRG1 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 AC106881.1-201ENST00000605849 3329 ntBASIC12.66□□□□□ -0.38
VPS25Q9BRG1 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 GPX1-201ENST00000419349 1106 ntBASIC12.66□□□□□ -0.38
VPS25Q9BRG1 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 EI24-211ENST00000534546 1544 ntTSL 2 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
VPS25Q9BRG1 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
VPS25Q9BRG1 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC12.65□□□□□ -0.38
VPS25Q9BRG1 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
VPS25Q9BRG1 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
VPS25Q9BRG1 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms