Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 LINC00602-201ENST00000629776 2065 ntBASIC17.87■□□□□ 0.45
VPS13AQ96RL7 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 KRT19P2-202ENST00000557173 1012 ntBASIC17.86■□□□□ 0.45
VPS13AQ96RL7 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13AQ96RL7 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 AC108073.2-201ENST00000464002 357 ntBASIC17.85■□□□□ 0.45
VPS13AQ96RL7 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 AC148477.5-201ENST00000625164 1645 ntBASIC17.85■□□□□ 0.45
VPS13AQ96RL7 AC079776.2-201ENST00000641154 1609 ntBASIC17.85■□□□□ 0.45
VPS13AQ96RL7 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 AC093214.1-201ENST00000511688 1107 ntBASIC17.85■□□□□ 0.45
VPS13AQ96RL7 AP005018.1-201ENST00000525475 301 ntBASIC17.85■□□□□ 0.45
VPS13AQ96RL7 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 SIGLEC16-201ENST00000599858 1437 ntBASIC17.85■□□□□ 0.45
VPS13AQ96RL7 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13AQ96RL7 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 MRPL20P1-201ENST00000400819 433 ntBASIC17.84■□□□□ 0.45
VPS13AQ96RL7 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 VN2R19P-201ENST00000442399 1052 ntBASIC17.84■□□□□ 0.45
VPS13AQ96RL7 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 EFS-203ENST00000429593 2610 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 AC005593.1-201ENST00000624894 515 ntBASIC17.84■□□□□ 0.45
VPS13AQ96RL7 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13AQ96RL7 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms