Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.59■□□□□ 0.73
LRCH3Q96II8 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
LRCH3Q96II8 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.59■□□□□ 0.73
LRCH3Q96II8 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.58■□□□□ 0.73
LRCH3Q96II8 AC006333.2-201ENST00000607957 2099 ntBASIC19.58■□□□□ 0.73
LRCH3Q96II8 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
LRCH3Q96II8 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
LRCH3Q96II8 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LRCH3Q96II8 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LRCH3Q96II8 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LRCH3Q96II8 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC19.58■□□□□ 0.73
LRCH3Q96II8 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
LRCH3Q96II8 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LRCH3Q96II8 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
LRCH3Q96II8 BAD-202ENST00000394531 631 ntTSL 3 BASIC19.58■□□□□ 0.72
LRCH3Q96II8 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LRCH3Q96II8 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
LRCH3Q96II8 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.58■□□□□ 0.72
LRCH3Q96II8 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.58■□□□□ 0.72
LRCH3Q96II8 AJ011932.1-201ENST00000621707 465 ntBASIC19.58■□□□□ 0.72
LRCH3Q96II8 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
LRCH3Q96II8 ZNF815P-204ENST00000434898 1737 ntBASIC19.58■□□□□ 0.72
LRCH3Q96II8 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LRCH3Q96II8 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.58■□□□□ 0.72
LRCH3Q96II8 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
LRCH3Q96II8 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.57■□□□□ 0.72
LRCH3Q96II8 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.57■□□□□ 0.72
LRCH3Q96II8 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.57■□□□□ 0.72
LRCH3Q96II8 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.57■□□□□ 0.72
LRCH3Q96II8 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
LRCH3Q96II8 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 GPR89P-201ENST00000407924 1495 ntBASIC19.57■□□□□ 0.72
LRCH3Q96II8 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.57■□□□□ 0.72
LRCH3Q96II8 AP000867.4-201ENST00000641616 219 ntBASIC19.57■□□□□ 0.72
LRCH3Q96II8 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.57■□□□□ 0.72
LRCH3Q96II8 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
LRCH3Q96II8 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LRCH3Q96II8 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LRCH3Q96II8 AL512353.2-201ENST00000448759 1962 ntBASIC19.56■□□□□ 0.72
LRCH3Q96II8 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.56■□□□□ 0.72
LRCH3Q96II8 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.56■□□□□ 0.72
LRCH3Q96II8 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LRCH3Q96II8 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LRCH3Q96II8 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.56■□□□□ 0.72
LRCH3Q96II8 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LRCH3Q96II8 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.56■□□□□ 0.72
LRCH3Q96II8 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LRCH3Q96II8 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.56■□□□□ 0.72
LRCH3Q96II8 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC19.56■□□□□ 0.72
LRCH3Q96II8 AC087641.1-201ENST00000557561 1021 ntBASIC19.56■□□□□ 0.72
LRCH3Q96II8 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19.56■□□□□ 0.72
LRCH3Q96II8 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.56■□□□□ 0.72
LRCH3Q96II8 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
LRCH3Q96II8 TCF3P1-201ENST00000423021 1937 ntBASIC19.56■□□□□ 0.72
LRCH3Q96II8 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
LRCH3Q96II8 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LRCH3Q96II8 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LRCH3Q96II8 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LRCH3Q96II8 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.56■□□□□ 0.72
LRCH3Q96II8 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LRCH3Q96II8 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LRCH3Q96II8 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LRCH3Q96II8 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.56■□□□□ 0.72
LRCH3Q96II8 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
LRCH3Q96II8 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.55■□□□□ 0.72
LRCH3Q96II8 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LRCH3Q96II8 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LRCH3Q96II8 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.55■□□□□ 0.72
LRCH3Q96II8 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LRCH3Q96II8 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
LRCH3Q96II8 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.55■□□□□ 0.72
LRCH3Q96II8 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
LRCH3Q96II8 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LRCH3Q96II8 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.55■□□□□ 0.72
LRCH3Q96II8 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.55■□□□□ 0.72
LRCH3Q96II8 POLD4-211ENST00000539074 714 ntTSL 3 BASIC19.55■□□□□ 0.72
LRCH3Q96II8 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LRCH3Q96II8 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
LRCH3Q96II8 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LRCH3Q96II8 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.55■□□□□ 0.72
LRCH3Q96II8 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms