Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 AC002347.1-201ENST00000569543 541 ntBASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 AL158211.5-201ENST00000623583 2518 ntBASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 AL032819.2-201ENST00000624543 2162 ntBASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 AC023274.1-201ENST00000418278 595 ntBASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 KRT18P65-201ENST00000439811 1286 ntBASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 AC009947.1-201ENST00000444350 727 ntBASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 AP000867.4-201ENST00000641616 219 ntBASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 AIRN-201ENST00000601203 4374 ntBASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.53■□□□□ 0.56
SLC44A3Q8N4M1 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 DNAJB3-202ENST00000449667 1266 ntBASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 MTDHP5-201ENST00000598980 586 ntBASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.52■□□□□ 0.56
SLC44A3Q8N4M1 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SLC44A3Q8N4M1 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.55
SLC44A3Q8N4M1 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SLC44A3Q8N4M1 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SLC44A3Q8N4M1 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SLC44A3Q8N4M1 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.52■□□□□ 0.55
SLC44A3Q8N4M1 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SLC44A3Q8N4M1 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.52■□□□□ 0.55
SLC44A3Q8N4M1 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SLC44A3Q8N4M1 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
SLC44A3Q8N4M1 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.51■□□□□ 0.55
SLC44A3Q8N4M1 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SLC44A3Q8N4M1 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SLC44A3Q8N4M1 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SLC44A3Q8N4M1 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SLC44A3Q8N4M1 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SLC44A3Q8N4M1 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SLC44A3Q8N4M1 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.51■□□□□ 0.55
SLC44A3Q8N4M1 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SLC44A3Q8N4M1 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms