Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 UNC93B2-201ENST00000285383 730 ntBASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 C1QL1P1-201ENST00000568105 661 ntBASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
DEPDC4Q8N2C3 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 AL355075.4-201ENST00000554988 638 ntBASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 AC131212.4-201ENST00000623606 975 ntBASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 HLA-A-209ENST00000638375 975 ntBASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 AL357033.4-201ENST00000617703 1807 ntBASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 OR6D1P-203ENST00000641209 4860 ntBASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
DEPDC4Q8N2C3 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 AC009053.2-201ENST00000563701 2365 ntBASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.9■□□□□ 0.3
DEPDC4Q8N2C3 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
DEPDC4Q8N2C3 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
DEPDC4Q8N2C3 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
DEPDC4Q8N2C3 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms