Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.97■□□□□ 0.63
HDAC4P56524 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.97■□□□□ 0.63
HDAC4P56524 FAM8A6P-201ENST00000407496 1135 ntBASIC18.97■□□□□ 0.63
HDAC4P56524 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.97■□□□□ 0.63
HDAC4P56524 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 AC022616.7-201ENST00000525383 220 ntBASIC18.97■□□□□ 0.63
HDAC4P56524 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.97■□□□□ 0.63
HDAC4P56524 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.97■□□□□ 0.63
HDAC4P56524 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
HDAC4P56524 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.97■□□□□ 0.63
HDAC4P56524 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HDAC4P56524 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.96■□□□□ 0.63
HDAC4P56524 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
HDAC4P56524 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HDAC4P56524 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDAC4P56524 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDAC4P56524 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDAC4P56524 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDAC4P56524 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDAC4P56524 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.96■□□□□ 0.63
HDAC4P56524 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.96■□□□□ 0.63
HDAC4P56524 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.96■□□□□ 0.63
HDAC4P56524 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.96■□□□□ 0.63
HDAC4P56524 FAM210CP-201ENST00000445714 574 ntBASIC18.96■□□□□ 0.63
HDAC4P56524 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HDAC4P56524 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.96■□□□□ 0.63
HDAC4P56524 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.96■□□□□ 0.63
HDAC4P56524 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
HDAC4P56524 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDAC4P56524 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.96■□□□□ 0.63
HDAC4P56524 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDAC4P56524 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDAC4P56524 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
HDAC4P56524 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.96■□□□□ 0.63
HDAC4P56524 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HDAC4P56524 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDAC4P56524 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
HDAC4P56524 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.96■□□□□ 0.63
HDAC4P56524 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.96■□□□□ 0.63
HDAC4P56524 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
HDAC4P56524 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDAC4P56524 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDAC4P56524 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDAC4P56524 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDAC4P56524 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDAC4P56524 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.95■□□□□ 0.62
HDAC4P56524 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.95■□□□□ 0.62
HDAC4P56524 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDAC4P56524 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HDAC4P56524 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDAC4P56524 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDAC4P56524 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDAC4P56524 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.95■□□□□ 0.62
HDAC4P56524 HBZP1-201ENST00000354915 429 ntBASIC18.95■□□□□ 0.62
HDAC4P56524 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
HDAC4P56524 AC112907.2-201ENST00000448639 330 ntBASIC18.95■□□□□ 0.62
HDAC4P56524 AC092647.4-201ENST00000457211 535 ntBASIC18.95■□□□□ 0.62
HDAC4P56524 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.95■□□□□ 0.62
HDAC4P56524 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.95■□□□□ 0.62
HDAC4P56524 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
HDAC4P56524 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.95■□□□□ 0.62
HDAC4P56524 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDAC4P56524 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.95■□□□□ 0.62
HDAC4P56524 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDAC4P56524 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HDAC4P56524 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.95■□□□□ 0.62
HDAC4P56524 AC020763.4-201ENST00000623414 4170 ntBASIC18.95■□□□□ 0.62
HDAC4P56524 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
HDAC4P56524 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HDAC4P56524 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDAC4P56524 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC4P56524 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC4P56524 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.94■□□□□ 0.62
HDAC4P56524 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC4P56524 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC4P56524 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC4P56524 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC4P56524 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.94■□□□□ 0.62
HDAC4P56524 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.94■□□□□ 0.62
HDAC4P56524 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.94■□□□□ 0.62
HDAC4P56524 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC4P56524 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC4P56524 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.94■□□□□ 0.62
HDAC4P56524 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC4P56524 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.94■□□□□ 0.62
HDAC4P56524 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.94■□□□□ 0.62
HDAC4P56524 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
HDAC4P56524 AC138028.4-201ENST00000564984 1845 ntBASIC18.94■□□□□ 0.62
HDAC4P56524 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
HDAC4P56524 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms