Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.11■□□□□ 0.33
SOX3P41225 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SOX3P41225 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.11■□□□□ 0.33
SOX3P41225 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX3P41225 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX3P41225 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.11■□□□□ 0.33
SOX3P41225 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX3P41225 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX3P41225 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX3P41225 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
SOX3P41225 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX3P41225 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SOX3P41225 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.11■□□□□ 0.33
SOX3P41225 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX3P41225 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.11■□□□□ 0.33
SOX3P41225 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX3P41225 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX3P41225 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.1■□□□□ 0.33
SOX3P41225 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX3P41225 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX3P41225 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SOX3P41225 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX3P41225 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SOX3P41225 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.1■□□□□ 0.33
SOX3P41225 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.1■□□□□ 0.33
SOX3P41225 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.1■□□□□ 0.33
SOX3P41225 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
SOX3P41225 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.1■□□□□ 0.33
SOX3P41225 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SOX3P41225 AC104390.1-201ENST00000555663 520 ntBASIC17.1■□□□□ 0.33
SOX3P41225 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
SOX3P41225 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SOX3P41225 AC083849.1-201ENST00000615227 514 ntBASIC17.1■□□□□ 0.33
SOX3P41225 HYMAI.1-201ENST00000620949 238 ntBASIC17.1■□□□□ 0.33
SOX3P41225 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.1■□□□□ 0.33
SOX3P41225 AL157888.1-201ENST00000631930 593 ntBASIC17.1■□□□□ 0.33
SOX3P41225 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SOX3P41225 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX3P41225 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX3P41225 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SOX3P41225 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.1■□□□□ 0.33
SOX3P41225 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SOX3P41225 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX3P41225 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.09■□□□□ 0.33
SOX3P41225 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.09■□□□□ 0.33
SOX3P41225 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.09■□□□□ 0.33
SOX3P41225 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.09■□□□□ 0.33
SOX3P41225 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.09■□□□□ 0.33
SOX3P41225 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.09■□□□□ 0.33
SOX3P41225 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.09■□□□□ 0.33
SOX3P41225 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 MIR3917-201ENST00000580971 93 ntBASIC17.09■□□□□ 0.33
SOX3P41225 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.09■□□□□ 0.33
SOX3P41225 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.09■□□□□ 0.33
SOX3P41225 AL121956.5-201ENST00000625261 221 ntBASIC17.09■□□□□ 0.33
SOX3P41225 AL358472.4-201ENST00000633140 710 ntBASIC17.09■□□□□ 0.33
SOX3P41225 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.09■□□□□ 0.33
SOX3P41225 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 LINC01311-201ENST00000565162 1445 ntBASIC17.09■□□□□ 0.33
SOX3P41225 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.09■□□□□ 0.33
SOX3P41225 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.09■□□□□ 0.33
SOX3P41225 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.09■□□□□ 0.33
SOX3P41225 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.09■□□□□ 0.33
SOX3P41225 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.09■□□□□ 0.33
SOX3P41225 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.09■□□□□ 0.33
SOX3P41225 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.09■□□□□ 0.33
SOX3P41225 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX3P41225 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SOX3P41225 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
SOX3P41225 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
SOX3P41225 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SOX3P41225 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.08■□□□□ 0.32
SOX3P41225 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SOX3P41225 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SOX3P41225 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SOX3P41225 AC092597.1-201ENST00000487352 616 ntBASIC17.08■□□□□ 0.32
SOX3P41225 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.08■□□□□ 0.32
SOX3P41225 AC010240.3-201ENST00000607688 395 ntBASIC17.08■□□□□ 0.32
SOX3P41225 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SOX3P41225 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SOX3P41225 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SOX3P41225 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms