Protein–RNA interactions for Protein: P00352

ALDH1A1, Retinal dehydrogenase 1, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALDH1A1P00352 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.61■□□□□ 0.89
ALDH1A1P00352 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ALDH1A1P00352 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ALDH1A1P00352 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
ALDH1A1P00352 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC20.61■□□□□ 0.89
ALDH1A1P00352 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.61■□□□□ 0.89
ALDH1A1P00352 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC20.61■□□□□ 0.89
ALDH1A1P00352 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC20.61■□□□□ 0.89
ALDH1A1P00352 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC20.61■□□□□ 0.89
ALDH1A1P00352 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC20.61■□□□□ 0.89
ALDH1A1P00352 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
ALDH1A1P00352 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.61■□□□□ 0.89
ALDH1A1P00352 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ALDH1A1P00352 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.61■□□□□ 0.89
ALDH1A1P00352 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ALDH1A1P00352 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC20.61■□□□□ 0.89
ALDH1A1P00352 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
ALDH1A1P00352 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.61■□□□□ 0.89
ALDH1A1P00352 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ALDH1A1P00352 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.6■□□□□ 0.89
ALDH1A1P00352 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ALDH1A1P00352 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.6■□□□□ 0.89
ALDH1A1P00352 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
ALDH1A1P00352 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ALDH1A1P00352 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.6■□□□□ 0.89
ALDH1A1P00352 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ALDH1A1P00352 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC20.6■□□□□ 0.89
ALDH1A1P00352 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ALDH1A1P00352 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC20.6■□□□□ 0.89
ALDH1A1P00352 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.6■□□□□ 0.89
ALDH1A1P00352 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC20.6■□□□□ 0.89
ALDH1A1P00352 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
ALDH1A1P00352 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC20.6■□□□□ 0.89
ALDH1A1P00352 AL031432.2-201ENST00000566714 459 ntBASIC20.6■□□□□ 0.89
ALDH1A1P00352 AL928711.1-201ENST00000570165 459 ntBASIC20.6■□□□□ 0.89
ALDH1A1P00352 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC20.6■□□□□ 0.89
ALDH1A1P00352 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
ALDH1A1P00352 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.6■□□□□ 0.89
ALDH1A1P00352 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ALDH1A1P00352 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
ALDH1A1P00352 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ALDH1A1P00352 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ALDH1A1P00352 AC004817.3-201ENST00000602957 2129 ntBASIC20.6■□□□□ 0.89
ALDH1A1P00352 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ALDH1A1P00352 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ALDH1A1P00352 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ALDH1A1P00352 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
ALDH1A1P00352 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ALDH1A1P00352 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
ALDH1A1P00352 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ALDH1A1P00352 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ALDH1A1P00352 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
ALDH1A1P00352 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.59■□□□□ 0.89
ALDH1A1P00352 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
ALDH1A1P00352 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.59■□□□□ 0.89
ALDH1A1P00352 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ALDH1A1P00352 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ALDH1A1P00352 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ALDH1A1P00352 CD99-202ENST00000381180 530 ntTSL 2 BASIC20.59■□□□□ 0.89
ALDH1A1P00352 ATP6V0CP3-201ENST00000417255 467 ntBASIC20.59■□□□□ 0.89
ALDH1A1P00352 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC20.59■□□□□ 0.89
ALDH1A1P00352 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC20.59■□□□□ 0.89
ALDH1A1P00352 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC20.59■□□□□ 0.89
ALDH1A1P00352 PAWRP1-201ENST00000451083 565 ntBASIC20.59■□□□□ 0.89
ALDH1A1P00352 IGHV3-65-201ENST00000523210 341 ntBASIC20.59■□□□□ 0.89
ALDH1A1P00352 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC20.59■□□□□ 0.89
ALDH1A1P00352 AC004449.1-201ENST00000564240 433 ntBASIC20.59■□□□□ 0.89
ALDH1A1P00352 AC008667.4-201ENST00000607370 168 ntBASIC20.59■□□□□ 0.89
ALDH1A1P00352 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
ALDH1A1P00352 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.59■□□□□ 0.89
ALDH1A1P00352 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ALDH1A1P00352 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ALDH1A1P00352 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
ALDH1A1P00352 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ALDH1A1P00352 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.59■□□□□ 0.89
ALDH1A1P00352 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC20.58■□□□□ 0.89
ALDH1A1P00352 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
ALDH1A1P00352 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
ALDH1A1P00352 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.58■□□□□ 0.89
ALDH1A1P00352 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.58■□□□□ 0.89
ALDH1A1P00352 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
ALDH1A1P00352 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ALDH1A1P00352 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ALDH1A1P00352 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ALDH1A1P00352 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ALDH1A1P00352 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC20.58■□□□□ 0.89
ALDH1A1P00352 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
ALDH1A1P00352 PDPK2P-202ENST00000562415 1191 ntBASIC20.58■□□□□ 0.89
ALDH1A1P00352 LSM12-202ENST00000585388 942 ntTSL 3 BASIC20.58■□□□□ 0.89
ALDH1A1P00352 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.58■□□□□ 0.89
ALDH1A1P00352 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC20.58■□□□□ 0.89
ALDH1A1P00352 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
ALDH1A1P00352 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
ALDH1A1P00352 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
ALDH1A1P00352 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
ALDH1A1P00352 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
ALDH1A1P00352 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.58■□□□□ 0.88
ALDH1A1P00352 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
ALDH1A1P00352 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
ALDH1A1P00352 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms