Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB3O15347 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB3O15347 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB3O15347 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGB3O15347 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 GAS2L1P1-201ENST00000420145 1480 ntBASIC14.63□□□□□ -0.07
HMGB3O15347 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC14.63□□□□□ -0.07
HMGB3O15347 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC14.63□□□□□ -0.07
HMGB3O15347 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
HMGB3O15347 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGB3O15347 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
HMGB3O15347 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC14.63□□□□□ -0.07
HMGB3O15347 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 AC016769.1-201ENST00000409132 1010 ntBASIC14.63□□□□□ -0.07
HMGB3O15347 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC14.63□□□□□ -0.07
HMGB3O15347 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
HMGB3O15347 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGB3O15347 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGB3O15347 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
HMGB3O15347 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
HMGB3O15347 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB3O15347 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC14.63□□□□□ -0.07
HMGB3O15347 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HMGB3O15347 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
HMGB3O15347 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
HMGB3O15347 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC14.62□□□□□ -0.07
HMGB3O15347 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
HMGB3O15347 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
HMGB3O15347 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 MFF-205ENST00000354503 1085 ntTSL 2 BASIC14.62□□□□□ -0.07
HMGB3O15347 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC14.62□□□□□ -0.07
HMGB3O15347 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC14.62□□□□□ -0.07
HMGB3O15347 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HMGB3O15347 AC005829.2-201ENST00000571422 1056 ntBASIC14.62□□□□□ -0.07
HMGB3O15347 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HMGB3O15347 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 PP12613-201ENST00000424958 2230 ntBASIC14.62□□□□□ -0.07
HMGB3O15347 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC14.62□□□□□ -0.07
HMGB3O15347 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
HMGB3O15347 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB3O15347 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC14.62□□□□□ -0.07
HMGB3O15347 NFYC-AS1-201ENST00000606277 1687 ntBASIC14.61□□□□□ -0.07
HMGB3O15347 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
HMGB3O15347 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
HMGB3O15347 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 AD000864.1-201ENST00000624076 2295 ntBASIC14.61□□□□□ -0.07
HMGB3O15347 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
HMGB3O15347 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
HMGB3O15347 HSCB-202ENST00000398941 955 ntTSL 2 BASIC14.61□□□□□ -0.07
HMGB3O15347 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC14.61□□□□□ -0.07
HMGB3O15347 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC14.61□□□□□ -0.07
HMGB3O15347 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC14.61□□□□□ -0.07
HMGB3O15347 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC14.61□□□□□ -0.07
HMGB3O15347 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC14.61□□□□□ -0.07
HMGB3O15347 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HMGB3O15347 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC14.61□□□□□ -0.07
HMGB3O15347 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGB3O15347 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms