Protein–RNA interactions for Protein: A6NDZ8

MBD3L4, Putative methyl-CpG-binding domain protein 3-like 4, humanhuman

Predicted RBP Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3L4A6NDZ8 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC15.9■□□□□ 0.14
MBD3L4A6NDZ8 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MBD3L4A6NDZ8 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MBD3L4A6NDZ8 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC15.9■□□□□ 0.14
MBD3L4A6NDZ8 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
MBD3L4A6NDZ8 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC15.9■□□□□ 0.14
MBD3L4A6NDZ8 PHGDH-209ENST00000641074 1780 ntBASIC15.9■□□□□ 0.14
MBD3L4A6NDZ8 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
MBD3L4A6NDZ8 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 ABCD1P5-201ENST00000445663 754 ntBASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 RBSN-204ENST00000449050 903 ntTSL 2 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 AC079776.4-201ENST00000511039 504 ntBASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 AP001005.1-201ENST00000571755 1248 ntBASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MBD3L4A6NDZ8 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 AP005117.1-201ENST00000584346 1413 ntBASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 FUOM-202ENST00000368551 628 ntTSL 3 BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 CD9-202ENST00000382515 1229 ntTSL 5 BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 AL022342.1-201ENST00000400363 863 ntBASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 HIST2H3DP1-201ENST00000401004 416 ntBASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 SCARNA2-201ENST00000458748 420 ntBASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 RNA5SP419-201ENST00000515908 135 ntBASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 DUTP2-201ENST00000519164 463 ntBASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 MTDHP3-201ENST00000594186 672 ntBASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MBD3L4A6NDZ8 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.87■□□□□ 0.13
MBD3L4A6NDZ8 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MBD3L4A6NDZ8 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MBD3L4A6NDZ8 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MBD3L4A6NDZ8 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MBD3L4A6NDZ8 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MBD3L4A6NDZ8 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
MBD3L4A6NDZ8 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC15.87■□□□□ 0.13
MBD3L4A6NDZ8 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
MBD3L4A6NDZ8 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MBD3L4A6NDZ8 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms