Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 PCDHB18P-201ENST00000524813 2368 ntBASIC16.26■□□□□ 0.19
VSX1Q9NZR4 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 AC010240.3-201ENST00000607688 395 ntBASIC16.26■□□□□ 0.19
VSX1Q9NZR4 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 AC067852.2-201ENST00000590513 2313 ntBASIC16.26■□□□□ 0.19
VSX1Q9NZR4 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 AC005332.8-201ENST00000622750 2735 ntBASIC16.26■□□□□ 0.19
VSX1Q9NZR4 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 LINC01126-201ENST00000623515 1646 ntBASIC16.26■□□□□ 0.19
VSX1Q9NZR4 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
VSX1Q9NZR4 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 AL024508.2-201ENST00000607749 1894 ntBASIC16.25■□□□□ 0.19
VSX1Q9NZR4 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 MMP23A-201ENST00000234610 1017 ntBASIC16.25■□□□□ 0.19
VSX1Q9NZR4 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 AL512604.3-201ENST00000569583 964 ntBASIC16.25■□□□□ 0.19
VSX1Q9NZR4 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
VSX1Q9NZR4 GNAS-203ENST00000306120 1878 ntBASIC16.25■□□□□ 0.19
VSX1Q9NZR4 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.24■□□□□ 0.19
VSX1Q9NZR4 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 SEC1P-202ENST00000473944 940 ntBASIC16.24■□□□□ 0.19
VSX1Q9NZR4 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 FAM87A-204ENST00000613235 858 ntBASIC16.24■□□□□ 0.19
VSX1Q9NZR4 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms