Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MMP28Q9H239 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
MMP28Q9H239 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MMP28Q9H239 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
MMP28Q9H239 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MMP28Q9H239 AL158047.1-201ENST00000445918 881 ntBASIC16.07■□□□□ 0.16
MMP28Q9H239 AC026366.1-201ENST00000488803 879 ntBASIC16.07■□□□□ 0.16
MMP28Q9H239 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC16.07■□□□□ 0.16
MMP28Q9H239 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MMP28Q9H239 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC16.07■□□□□ 0.16
MMP28Q9H239 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.07■□□□□ 0.16
MMP28Q9H239 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MMP28Q9H239 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.07■□□□□ 0.16
MMP28Q9H239 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MMP28Q9H239 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
MMP28Q9H239 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.07■□□□□ 0.16
MMP28Q9H239 AC008741.2-201ENST00000612792 3115 ntBASIC16.07■□□□□ 0.16
MMP28Q9H239 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MMP28Q9H239 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
MMP28Q9H239 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
MMP28Q9H239 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.06■□□□□ 0.16
MMP28Q9H239 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.06■□□□□ 0.16
MMP28Q9H239 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.06■□□□□ 0.16
MMP28Q9H239 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.06■□□□□ 0.16
MMP28Q9H239 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 TFP1-202ENST00000475455 1573 ntBASIC16.06■□□□□ 0.16
MMP28Q9H239 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC16.06■□□□□ 0.16
MMP28Q9H239 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC16.06■□□□□ 0.16
MMP28Q9H239 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC16.06■□□□□ 0.16
MMP28Q9H239 GCSHP5-201ENST00000443090 522 ntBASIC16.06■□□□□ 0.16
MMP28Q9H239 AC128676.1-201ENST00000454392 318 ntBASIC16.06■□□□□ 0.16
MMP28Q9H239 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC16.06■□□□□ 0.16
MMP28Q9H239 AC008403.3-201ENST00000598924 454 ntBASIC16.06■□□□□ 0.16
MMP28Q9H239 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC16.06■□□□□ 0.16
MMP28Q9H239 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 AL121829.2-201ENST00000620908 328 ntBASIC16.06■□□□□ 0.16
MMP28Q9H239 AP006294.2-201ENST00000641667 209 ntBASIC16.06■□□□□ 0.16
MMP28Q9H239 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
MMP28Q9H239 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
MMP28Q9H239 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
MMP28Q9H239 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
MMP28Q9H239 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
MMP28Q9H239 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.06■□□□□ 0.16
MMP28Q9H239 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MMP28Q9H239 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.06■□□□□ 0.16
MMP28Q9H239 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC16.05■□□□□ 0.16
MMP28Q9H239 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
MMP28Q9H239 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
MMP28Q9H239 AL023806.1-201ENST00000603994 1649 ntBASIC16.05■□□□□ 0.16
MMP28Q9H239 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
MMP28Q9H239 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
MMP28Q9H239 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC16.05■□□□□ 0.16
MMP28Q9H239 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC16.05■□□□□ 0.16
MMP28Q9H239 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
MMP28Q9H239 KRT17P3-201ENST00000420566 1262 ntBASIC16.05■□□□□ 0.16
MMP28Q9H239 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC16.05■□□□□ 0.16
MMP28Q9H239 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC16.05■□□□□ 0.16
MMP28Q9H239 AC142381.4-202ENST00000563973 229 ntBASIC16.05■□□□□ 0.16
MMP28Q9H239 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MMP28Q9H239 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms